## Beginning of track view track A1_2_ChIPseq_Dec2015 compositeTrack on shortLabel A1_2 Dec2015 longLabel Trotter A1_2 ChIPseq Dec2015 priority 1000 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ PEAK=Peaks \ subGroup2 Group1 Group1 \ EtOH=EtOH \ Dex=Dex \ sortOrder Group1=+ view=+ ## Views track coverage data track A1_2_ChIPseq_Dec2015view1 parent A1_2_ChIPseq_Dec2015 shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track Dex_Input parent A1_2_ChIPseq_Dec2015view1 on bigDataUrl Dex_Input.bw shortLabel Dex Input longLabel Dex Input type bigWig color 100,16,100 priority 1001 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Dex view=COV ## Coverage track track Dex_Novus_Brg1 parent A1_2_ChIPseq_Dec2015view1 on bigDataUrl Dex_Nov.bw shortLabel Dex Novus_Brg1 longLabel Dex Novus_Brg1 type bigWig color 140,16,140 priority 1002 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Dex view=COV ## Coverage track track Dex_Lab_Brg1 parent A1_2_ChIPseq_Dec2015view1 on bigDataUrl Dex_Lab.bw shortLabel Dex Lab_Brg1 longLabel Dex Lab_Brg1 type bigWig color 180,16,180 priority 1003 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Dex view=COV ## Coverage track track Dex_GR parent A1_2_ChIPseq_Dec2015view1 on bigDataUrl Dex_GR.bw shortLabel Dex GR longLabel Dex GR type bigWig color 220,16,220 priority 1004 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Dex view=COV ## Coverage track track EtOH_Input parent A1_2_ChIPseq_Dec2015view1 on bigDataUrl EtOH_Input.bw shortLabel EtOH Input longLabel EtOH Input type bigWig color 0,100,16 priority 1005 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=EtOH view=COV ## Coverage track track EtOH_Novus_Brg1 parent A1_2_ChIPseq_Dec2015view1 on bigDataUrl EtOH_Nov.bw shortLabel EtOH Novus_Brg1 longLabel EtOH Novus_Brg1 type bigWig color 0,120,16 priority 1006 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=EtOH view=COV ## Coverage track track EtOH_Lab_Brg1 parent A1_2_ChIPseq_Dec2015view1 on bigDataUrl EtOH_Lab.bw shortLabel EtOH Lab_Brg1 longLabel EtOH Lab_Brg1 type bigWig color 0,140,16 priority 1007 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=EtOH view=COV ## Coverage track track EtOH_GR parent A1_2_ChIPseq_Dec2015view1 on bigDataUrl EtOH_GR.bw shortLabel EtOH GR longLabel EtOH GR type bigWig color 0,160,16 priority 1008 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=EtOH view=COV ## Beginning of track view track trotter1xJune0214 compositeTrack on shortLabel Trotter ChIPseq June2014 (1xRPGC) longLabel Trotter ChIPseq June2014 (1xRPGC) priority 2400 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ PEAK=Peaks \ JUNC=Junctions subGroup2 Group1 Group1 \ InputEtOH=InputEtOH \ InputDex=InputDex \ Brg1EtOH=Brg1EtOH \ Brg1Dex=Brg1Dex \ GREtOH=GREtOH \ GRDex=GRDex \ Ku70EtOH=Ku70EtOH \ Ku70Dex=Ku70Dex sortOrder Group1=+ view=+ ## Views track coverage data track trotter1xJune0214View1 parent trotter1xJune0214 shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track InputEtOH_coverage_1x parent trotter1xJune0214View1 on bigDataUrl InputEtOH_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeTo1x-scale.bw shortLabel InputEtOH coverage longLabel InputEtOH coverage type bigWig color 127,127,127 priority 2402 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=InputEtOH view=COV ## Coverage track track InputDex_coverage_1x parent trotter1xJune0214View1 on bigDataUrl InputDex_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeTo1x-scale.bw shortLabel InputDex coverage longLabel InputDex coverage type bigWig color 77,77,77 priority 2404 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=InputDex view=COV ## Coverage track track BRG1EtOH_coverage_1x parent trotter1xJune0214View1 on bigDataUrl BRG1EtOH_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeTo1x-scale.bw shortLabel Brg1EtOH coverage longLabel Brg1EtOH coverage type bigWig color 30,100,185 priority 2406 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Brg1EtOH view=COV ## Coverage track track BRG1Dex_coverage_1x parent trotter1xJune0214View1 on bigDataUrl BRG1Dex_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeTo1x-scale.bw shortLabel Brg1Dex coverage longLabel Brg1Dex coverage type bigWig color 0,69,150 priority 2408 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Brg1Dex view=COV ## Coverage track track GREtOHBRG1_coverage_1x parent trotter1xJune0214View1 on bigDataUrl GREtOHBRG1_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeTo1x-scale.bw shortLabel GREtOH coverage longLabel GREtOH coverage type bigWig color 159,121,238 priority 2410 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=GREtOH view=COV ## Coverage track track GRDexBRG1_coverage_1x parent trotter1xJune0214View1 on bigDataUrl GRDexBRG1_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeTo1x-scale.bw shortLabel GRDex coverage longLabel GRDex coverage type bigWig color 138,43,226 priority 2412 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=GRDex view=COV ## Coverage track track Ku70EtOH_coverage_1x parent trotter1xJune0214View1 on bigDataUrl Ku70EtOH_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeTo1x-scale.bw shortLabel Ku70EtOH coverage longLabel Ku70EtOH coverage type bigWig color 32,178,170 priority 2414 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Ku70EtOH view=COV ## Coverage track track Ku70Dex_coverage_1x parent trotter1xJune0214View1 on bigDataUrl Ku70Dex_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeTo1x-scale.bw shortLabel Ku70Dex coverage longLabel Ku70Dex coverage type bigWig color 0,134,139 priority 2416 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Ku70Dex view=COV ## Views track for ChIPseq peaks track trotter1xJune0214View3 parent trotter1xJune0214 shortLabel Peaks view PEAK visibility pack type bigBed allButtonPair on centerLabelsDense on dragAndDrop on viewUi on # Peak track track Brg1EtOH_peaks parent trotter1xJune0214View3 on bigDataUrl BRG1EtOH_vs_InputEtOH.findPeaks_none.150.150_fdr0.01_p0.00001_foc0_loc300_fc4_minNA.bb shortLabel Brg1EtOH peaks longLabel Brg1EtOH peaks type bigBed visibility pack priority 2602 color 2,100,185 subGroups Group1=Brg1EtOH view=PEAK # Peak track track Brg1Dex_peaks parent trotter1xJune0214View3 on bigDataUrl BRG1Dex_vs_InputDex.findPeaks_none.150.150_fdr0.01_p0.00001_foc0_loc300_fc4_minNA.bb shortLabel Brg1Dex peaks longLabel Brg1Dex peaks type bigBed visibility pack priority 2604 color 0,69,150 subGroups Group1=Brg1Dex view=PEAK # Peak track track GREtOH_peaks parent trotter1xJune0214View3 on bigDataUrl GREtOHBRG1_vs_InputEtOH.findPeaks_none.150.150_fdr0.01_p0.00001_foc0_loc300_fc4_minNA.bb shortLabel GREtOH peaks longLabel GREtOH peaks type bigBed visibility pack priority 2606 color 159,121,238 subGroups Group1=GREtOH view=PEAK # Peak track track GRDex_peaks parent trotter1xJune0214View3 on bigDataUrl GRDexBRG1_vs_InputDex.findPeaks_none.150.150_fdr0.01_p0.00001_foc0_loc300_fc4_minNA.bb shortLabel GRDex peaks longLabel GRDex peaks type bigBed visibility pack priority 2608 color 138,43,226 subGroups Group1=GRDex view=PEAK # Peak track track Ku70EtOH_peaks parent trotter1xJune0214View3 on bigDataUrl Ku70EtOH_vs_InputEtOH.findPeaks_none.150.150_fdr0.01_p0.00001_foc0_loc300_fc4_minNA.bb shortLabel Ku70EtOH peaks longLabel Ku70EtOH peaks type bigBed visibility pack priority 2610 color 32,178,170 subGroups Group1=Ku70EtOH view=PEAK # Peak track track Ku70Dex_peaks parent trotter1xJune0214View3 on bigDataUrl Ku70Dex_vs_InputDex.findPeaks_none.150.150_fdr0.01_p0.00001_foc0_loc300_fc4_minNA.bb shortLabel Ku70Dex peaks longLabel Ku70Dex peaks type bigBed visibility pack priority 2612 color 0,134,139 subGroups Group1=Ku70Dex view=PEAK ## Beginning of track view track trotter1xOct2014 compositeTrack on shortLabel Trotter ChIPseq Oct2014 (1xRPGC) longLabel Trotter ChIPseq Oct2014 (1xRPGC) priority 2700 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage # PEAK=Peaks \ # JUNC=Junctions subGroup2 Group1 Group1 \ BRG1Dex15min=BRG1Dex15min \ BRG1EtOH15min=BRG1EtOH15min \ GRDex15min=GRDex15min \ GREtOH15min=GREtOH15min \ InputDex15min=InputDex15min \ InputEtOH15min=InputEtOH15min sortOrder Group1=+ view=+ ## Views track coverage data track trotter1xOct2014View1 parent trotter1xOct2014 shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track BRG1Dex15min_coverage parent trotter1xOct2014View1 on bigDataUrl BRG1Dex15min_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-nodupes-150-bin10-normalizeTo1x-scale.bw shortLabel BRG1Dex15min coverage longLabel BRG1Dex15min coverage type bigWig color 255,69,0 priority 2702 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=BRG1Dex15min view=COV ## Coverage track track BRG1EtOH15min_coverage parent trotter1xOct2014View1 on bigDataUrl BRG1EtOH15min_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-nodupes-150-bin10-normalizeTo1x-scale.bw shortLabel BRG1EtOH15min coverage longLabel BRG1EtOH15min coverage type bigWig color 255,140,105 priority 2704 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=BRG1EtOH15min view=COV ## Coverage track track GRDex15min_coverage parent trotter1xOct2014View1 on bigDataUrl GRDex15min_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-nodupes-150-bin10-normalizeTo1x-scale.bw shortLabel GRDex15min coverage longLabel GRDex15min coverage type bigWig color 138,43,226 priority 2706 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=GRDex15min view=COV ## Coverage track track GREtOH15min_coverage parent trotter1xOct2014View1 on bigDataUrl GREtOH15min_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-nodupes-150-bin10-normalizeTo1x-scale.bw shortLabel GREtOH15min coverage longLabel GREtOH15min coverage type bigWig color 159,121,238 priority 2708 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=GREtOH15min view=COV ## Coverage track track InputDex15min_coverage parent trotter1xOct2014View1 on bigDataUrl InputDex15min_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-nodupes-150-bin10-normalizeTo1x-scale.bw shortLabel InputDex15min coverage longLabel InputDex15min coverage type bigWig color 77,77,77 priority 2710 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=InputDex15min view=COV ## Coverage track track InputEtOH15min_coverage parent trotter1xOct2014View1 on bigDataUrl InputEtOH15min_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-nodupes-150-bin10-normalizeTo1x-scale.bw shortLabel InputEtOH15min coverage longLabel InputEtOH15min coverage type bigWig color 127,127,127 priority 2712 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=InputEtOH15min view=COV