## Beginning of track view track GR_Timecourse compositeTrack on shortLabel GR_Timecourse longLabel GR_Timecourse priority 500 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ PEAK=Peaks \ subGroup2 Group1 Group1 \ EtOH=EtOH \ Dex=Dex \ sortOrder Group1=+ view=+ ## Views track coverage data track GR_Timecourseview1 parent GR_Timecourse shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track EtOH parent GR_Timecourseview1 on bigDataUrl GR_0.dedupe.bw shortLabel EtOH longLabel EtOH type bigWig color 79,127,158 priority 501 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=EtOH view=COV ## Coverage track track Dex_15min parent GR_Timecourseview1 on bigDataUrl GR_15MIN.dedupe.bw shortLabel Dex_15min longLabel Dex_15min type bigWig color 79,127,158 priority 502 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Dex view=COV ## Coverage track track Dex_30min parent GR_Timecourseview1 on bigDataUrl GR_30MIN.dedupe.bw shortLabel Dex_30min longLabel Dex_30min type bigWig color 79,127,158 priority 503 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=EtOH view=COV ## Coverage track track Dex_1hr parent GR_Timecourseview1 on bigDataUrl GR_1HR.dedupe.bw shortLabel Dex_1hr longLabel Dex_1hr type bigWig color 79,127,158 priority 504 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Dex view=COV ## Coverage track track Dex_2hr parent GR_Timecourseview1 on bigDataUrl GR_2HR.dedupe.bw shortLabel Dex_2hr longLabel Dex_2hr type bigWig color 79,127,158 priority 505 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Dex view=COV ## Coverage track track Dex_4hr parent GR_Timecourseview1 on bigDataUrl GR_4HR.dedupe.bw shortLabel Dex_4hr longLabel Dex_4hr type bigWig color 79,127,158 priority 506 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Dex view=COV ## Coverage track track Dex_8hr parent GR_Timecourseview1 on bigDataUrl GR_8HR.dedupe.bw shortLabel Dex_8hr longLabel Dex_8hr type bigWig color 79,127,158 priority 507 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Dex view=COV ## Coverage track track Dex_18hr parent GR_Timecourseview1 on bigDataUrl GR_18HR.dedupe.bw shortLabel Dex_18hr longLabel Dex_18hr type bigWig color 79,127,158 priority 508 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Dex view=COV ## Beginning of track view track A1A3_Rpb3 compositeTrack on shortLabel A1A3_Rpb3 longLabel A1A3_Rpb3 priority 2300 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ PEAK=Peaks \ subGroup2 Group1 Group1 \ EtOH=EtOH \ Dex=Dex \ sortOrder Group1=+ view=+ ## Views track coverage data track A1A3_Rpb3view1 parent A1A3_Rpb3 shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track Untr_EtOH parent A1A3_Rpb3view1 on bigDataUrl A1A3_UE.dedupe.bw shortLabel Untr_EtOH longLabel Untr_EtOH type bigWig color 42,214,137 priority 2501 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=EtOH view=COV ## Coverage track track Untr_Dex parent A1A3_Rpb3view1 on bigDataUrl A1A3_UD.dedupe.bw shortLabel Untr_Dex longLabel Untr_Dex type bigWig color 175,0,200 priority 2502 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Dex view=COV ## Coverage track track Dox_EtOH parent A1A3_Rpb3view1 on bigDataUrl A1A3_DE.dedupe.bw shortLabel Dox_EtOH longLabel Dox_EtOH type bigWig color 33,150,97 priority 2503 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=EtOH view=COV ## Coverage track track Dox_Dex parent A1A3_Rpb3view1 on bigDataUrl A1A3_DD.dedupe.bw shortLabel Dox_Dex longLabel Dox_Dex type bigWig color 100,0,125 priority 2504 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Dex view=COV ## Beginning of track view track A1-2_StartSeq compositeTrack on shortLabel A1-2_StartSeq longLabel A1-2_StartSeq priority 900 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ PEAK=Peaks \ subGroup2 Group1 Group1 \ EtOH=EtOH \ Dex=Dex \ sortOrder Group1=+ view=+ ## Views track coverage data track A1-2_StartSeqview1 parent A1-2_StartSeq shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track untd1hour_5prRNA_forward parent A1-2_StartSeqview1 on bigDataUrl untd1hour_5prRNA_forward.bw shortLabel untd1hour_5prRNA_forward longLabel untd1hour_5prRNA_forward type bigWig color 0,0,0 priority 901 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=EtOH view=COV ## Coverage track track untd1hour_5prRNA_reverse parent A1-2_StartSeqview1 on bigDataUrl untd1hour_5prRNA_reverse.bw shortLabel untd1hour_5prRNA_reverse longLabel untd1hour_5prRNA_reverse type bigWig color 0,0,0 priority 902 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=EtOH view=COV ## Coverage track track dex1hour_5prRNA_forward parent A1-2_StartSeqview1 on bigDataUrl dex1hour_5prRNA_forward.bw shortLabel dex1hour_5prRNA_forward longLabel dex1hour_5prRNA_forward type bigWig color 150,0,0 priority 903 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Dex view=COV ## Coverage track track dex1hour_5prRNA_reverse parent A1-2_StartSeqview1 on bigDataUrl dex1hour_5prRNA_reverse.bw shortLabel dex1hour_5prRNA_reverse longLabel dex1hour_5prRNA_reverse type bigWig color 150,0,0 priority 904 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Dex view=COV #################################### ## track set ## A1-2_1hr_RNAseq track A1-2_RNAseq superTrack on show shortLabel A1-2_RNAseq_strandedCoverage longLabel A1-2_RNAseq_strandedCoverage priority 800 # ################################## # # Overlay multiple stranded tracks track untreated_stranded superTrack A1-2_RNAseq full container multiWig aggregate transparentOverlay shortLabel untreated stranded coverage longLabel untreated stranded coverage showSubtrackColorOnUi on type bigWig priority 801 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ################################## track U1_plus parent untreated_stranded bigDataUrl unt1hr_RNAseq_rep1_ES1321.plus.bw type bigWig color 255,0,0 priority 802 # ################################## track U2_plus parent untreated_stranded bigDataUrl unt1hr_RNAseq_rep2_ES1322.plus.bw type bigWig color 200,0,0 priority 803 # ################################## track U3_plus parent untreated_stranded bigDataUrl unt1hr_RNAseq_rep3_ES1323.plus.bw type bigWig color 150,0,0 priority 804 # ################################## track U1_minus parent untreated_stranded bigDataUrl unt1hr_RNAseq_rep1_ES1321.minus.bw type bigWig color 255,0,0 priority 805 # ################################## track U2_minus parent untreated_stranded bigDataUrl unt1hr_RNAseq_rep2_ES1322.minus.bw type bigWig color 200,0,0 priority 806 # ################################## track U3_minus parent untreated_stranded bigDataUrl unt1hr_RNAseq_rep3_ES1323.minus.bw type bigWig color 150,0,0 priority 807 # ################################## # # Overlay multiple stranded tracks track dex_stranded superTrack A1-2_RNAseq full container multiWig aggregate transparentOverlay shortLabel dex stranded coverage longLabel dex stranded coverage showSubtrackColorOnUi on type bigWig priority 808 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ################################## track D1_plus parent dex_stranded bigDataUrl dex1hr_RNAseq_rep1_ES1324.plus.bw type bigWig color 0,250,0 priority 809 # ################################## track D2_plus parent dex_stranded bigDataUrl dex1hr_RNAseq_rep2_ES1325.plus.bw type bigWig color 0,200,0 priority 810 # ################################## track D3_plus parent dex_stranded bigDataUrl dex1hr_RNAseq_rep3_ES1326.plus.bw type bigWig color 0,150,0 priority 811 # ################################## track D1_minus parent dex_stranded bigDataUrl dex1hr_RNAseq_rep1_ES1324.minus.bw type bigWig color 0,250,0 priority 812 # ################################## track D2_minus parent dex_stranded bigDataUrl dex1hr_RNAseq_rep2_ES1325.minus.bw type bigWig color 0,200,0 priority 813 # ################################## track D3_minus parent dex_stranded bigDataUrl dex1hr_RNAseq_rep3_ES1326.minus.bw type bigWig color 0,150,0 priority 814 ## Beginning of track view track A1-2_Pioneers compositeTrack on shortLabel A1-2_Pioneers longLabel A1-2_Pioneers priority 2400 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ PEAK=Peaks \ subGroup2 Group1 Group1 \ EtOH=EtOH \ Dex=Dex \ sortOrder Group1=+ view=+ ## Views track coverage data track A1-2_Pioneersview1 parent A1-2_Pioneers shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track Gata3_EtOH parent A1-2_Pioneersview1 on bigDataUrl Gata3_EtOH.dedupe.bw shortLabel Gata3_EtOH longLabel Gata3_EtOH type bigWig color 90,90,150 priority 2401 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=EtOH view=COV ## Coverage track track Gata3_Dex parent A1-2_Pioneersview1 on bigDataUrl Gata3_Dex.dedupe.bw shortLabel Gata3_Dex longLabel Gata3_Dex type bigWig color 90,150,150 priority 2402 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Dex view=COV ## Coverage track track FoxA1_EtOH parent A1-2_Pioneersview1 on bigDataUrl FoxA1_EtOH.dedupe.bw shortLabel FoxA1_EtOH longLabel FoxA1_EtOH type bigWig color 90,90,150 priority 2403 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=EtOH view=COV ## Coverage track track FoxA1_Dex parent A1-2_Pioneersview1 on bigDataUrl FoxA1_Dex.dedupe.bw shortLabel FoxA1_Dex longLabel FoxA1_Dex type bigWig color 90,150,150 priority 2402 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Dex view=COV ## Beginning of track view track A1-2_K27mods compositeTrack on shortLabel A1-2_K27mods longLabel A1-2_K27mods priority 2300 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ PEAK=Peaks \ subGroup2 Group1 Group1 \ EtOH=EtOH \ Dex=Dex \ sortOrder Group1=+ view=+ ## Views track coverage data track A1-2_K27modsview1 parent A1-2_K27mods shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track 27ac_EtOH parent A1-2_K27modsview1 on bigDataUrl 27acEtOH.sorted.dedupe.bw shortLabel 27ac_EtOH longLabel 27ac_EtOH type bigWig color 90,90,150 priority 2301 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=EtOH view=COV ## Coverage track track 27ac_Dex parent A1-2_K27modsview1 on bigDataUrl 27acDex.sorted.dedupe.bw shortLabel 27ac_Dex longLabel 27ac_Dex type bigWig color 90,150,150 priority 2302 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Dex view=COV ## Coverage track track 27me3_EtOH parent A1-2_K27modsview1 on bigDataUrl 27me3EtOH.sorted.dedupe.bw shortLabel 27me3_EtOH longLabel 27me3_EtOH type bigWig color 90,90,150 priority 2303 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=EtOH view=COV ## Coverage track track 27me3_Dex parent A1-2_K27modsview1 on bigDataUrl 27me3Dex.sorted.dedupe.bw shortLabel 27me3_Dex longLabel 27me3_Dex type bigWig color 90,150,150 priority 2302 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Dex view=COV ## Beginning of track view track SW13_GR compositeTrack on shortLabel SW13_GR longLabel SW13_GR priority 2200 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ PEAK=Peaks \ subGroup2 Group1 Group1 \ LacZ=LacZ \ Brg1=Brg1 \ sortOrder Group1=+ view=+ ## Views track coverage data track SW13_GRview1 parent SW13_GR shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track GR_LacZ_rep1 parent SW13_GRview1 on bigDataUrl GR_LacZ.filter.dedupe.bw shortLabel GR_LacZ_rep1 longLabel GR_LacZ_rep1 type bigWig color 150,0,150 priority 2201 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=LacZ view=COV ## Coverage track track GR_LacZ_rep2 parent SW13_GRview1 on bigDataUrl GR_L2.sorted.dedupe.bw shortLabel GR_LacZ_rep2 longLabel GR_LacZ_rep2 type bigWig color 150,0,150 priority 2202 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=LacZ view=COV ## Coverage track track GR_Brg1_rep1 parent SW13_GRview1 on bigDataUrl GR_Brg1.filter.dedupe.bw shortLabel GR_Brg1_rep1 longLabel GR_Brg1_rep1 type bigWig color 0,150,150 priority 2203 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Brg1 view=COV ## Coverage track track GR_Brg1_rep2 parent SW13_GRview1 on bigDataUrl GR_B2.sorted.dedupe.bw shortLabel GR_Brg1_rep2 longLabel GR_Brg1_rep2 type bigWig color 0,150,150 priority 2204 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Brg1 view=COV ## Beginning of track view track Triptolide compositeTrack on shortLabel Triptolide longLabel Triptolide priority 2100 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ PEAK=Peaks \ subGroup2 Group1 Group1 \ EtOH=EtOH \ Dex=Dex \ subGroup3 Group2 Group2 \ DMSO=DMSO \ Trip=Trip \ sortOrder Group1=+ Group2=+ view=+ ## Views track coverage data track Triptolideview1 parent Triptolide shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track GR_Dex_Trip parent Triptolideview1 on bigDataUrl TD-GR.bw shortLabel GR_TD longLabel GR_Dex_Trip type bigWig color 100,16,100 priority 2101 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Dex Group2=Trip view=COV ## Coverage track track GR_Dex_DMSO parent Triptolideview1 on bigDataUrl DD-GR.bw shortLabel GR_DD longLabel GR_Dex_Dmso type bigWig color 140,16,140 priority 2102 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Dex Group2=DMSO view=COV ## Beginning of track view track A1_2_ChIPseq_Dec2015 compositeTrack on shortLabel A1_2 Dec2015 longLabel Trotter A1_2 ChIPseq Dec2015 priority 1000 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ PEAK=Peaks \ subGroup2 Group1 Group1 \ EtOH=EtOH \ Dex=Dex \ sortOrder Group1=+ view=+ ## Views track coverage data track A1_2_ChIPseq_Dec2015view1 parent A1_2_ChIPseq_Dec2015 shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track Dex_Input parent A1_2_ChIPseq_Dec2015view1 on bigDataUrl Dex_Input.bw shortLabel Dex Input longLabel Dex Input type bigWig color 100,16,100 priority 1001 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Dex view=COV ## Coverage track track Dex_Novus_Brg1 parent A1_2_ChIPseq_Dec2015view1 on bigDataUrl Dex_Nov.bw shortLabel Dex Novus_Brg1 longLabel Dex Novus_Brg1 type bigWig color 140,16,140 priority 1003 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Dex view=COV ## Coverage track track Dex_Lab_Brg1 parent A1_2_ChIPseq_Dec2015view1 on bigDataUrl Dex_Lab.bw shortLabel Dex Lab_Brg1 longLabel Dex Lab_Brg1 type bigWig color 66,134,244 priority 1005 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Dex view=COV ## Coverage track track Dex_GR parent A1_2_ChIPseq_Dec2015view1 on bigDataUrl Dex_GR.bw shortLabel Dex GR longLabel Dex GR type bigWig color 220,16,220 priority 1007 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Dex view=COV ## Coverage track track EtOH_Input parent A1_2_ChIPseq_Dec2015view1 on bigDataUrl EtOH_Input.bw shortLabel EtOH Input longLabel EtOH Input type bigWig color 0,100,16 priority 1009 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=EtOH view=COV ## Coverage track track EtOH_Novus_Brg1 parent A1_2_ChIPseq_Dec2015view1 on bigDataUrl EtOH_Nov.bw shortLabel EtOH Novus_Brg1 longLabel EtOH Novus_Brg1 type bigWig color 0,120,16 priority 1011 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=EtOH view=COV ## Coverage track track EtOH_Lab_Brg1 parent A1_2_ChIPseq_Dec2015view1 on bigDataUrl EtOH_Lab.bw shortLabel EtOH Lab_Brg1 longLabel EtOH Lab_Brg1 type bigWig color 0,140,16 priority 1013 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=EtOH view=COV ## Coverage track track EtOH_GR parent A1_2_ChIPseq_Dec2015view1 on bigDataUrl EtOH_GR.bw shortLabel EtOH GR longLabel EtOH GR type bigWig color 0,160,16 priority 1015 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=EtOH view=COV ## Views track for ChIPseq peaks track A1_2_ChIPseq_Dec2015view2 parent A1_2_ChIPseq_Dec2015 shortLabel Peaks view PEAK visibility pack type bigBed allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on viewUi on priority 1020 # ChIP-seq Peaks track Dex_Lab.Peaks parent A1_2_ChIPseq_Dec2015view2 bigDataUrl Dex_Lab.bb shortLabel Dex_Lab longLabel Dex_Lab type bigBed color 140,16,140 visibility hide priority 1004 subGroups Group1=Dex view=PEAK track EtOH_Nov.Peaks parent A1_2_ChIPseq_Dec2015view2 bigDataUrl EtOH_Nov.bb shortLabel EtOH_Nov longLabel EtOH_Nov type bigBed color 0,120,16 visibility hide priority 1006 subGroups Group1=EtOH view=PEAK track EtOH_Lab.Peaks parent A1_2_ChIPseq_Dec2015view2 bigDataUrl EtOH_Lab.bb shortLabel EtOH_Lab longLabel EtOH_Lab type bigBed color 0,140,16 visibility hide priority 1008 subGroups Group1=EtOH view=PEAK track Dex_GR.Peaks parent A1_2_ChIPseq_Dec2015view2 bigDataUrl Dex_GR.bb shortLabel Dex_GR longLabel Dex_GR type bigBed color 220,16,220 visibility hide priority 1010 subGroups Group1=Dex view=PEAK track ClassI.Peaks parent A1_2_ChIPseq_Dec2015view2 bigDataUrl ClassI.GRpeaks.bb shortLabel ClassI.Peaks longLabel ClassI.Peaks type bigBed color 36,116,244 visibility hide priority 1012 subGroups Group1=Dex view=PEAK track ClassII.Peaks parent A1_2_ChIPseq_Dec2015view2 bigDataUrl ClassII.GRpeaks.bb shortLabel ClassII.GRpeaks longLabel ClassII.GRpeaks type bigBed color 244,171,36 visibility hide priority 1014 subGroups Group1=Dex view=PEAK track ClassIII.Peaks parent A1_2_ChIPseq_Dec2015view2 bigDataUrl ClassIII.GRpeaks.bb shortLabel ClassIII.GRpeaks longLabel ClassIII.GRpeaks type bigBed color 8,178,82 visibility hide priority 1016 subGroups Group1=Dex view=PEAK ## Beginning of track view track trotter1xJune0214 compositeTrack on shortLabel Trotter ChIPseq June2014 (1xRPGC) longLabel Trotter ChIPseq June2014 (1xRPGC) priority 2400 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ PEAK=Peaks \ JUNC=Junctions subGroup2 Group1 Group1 \ InputEtOH=InputEtOH \ InputDex=InputDex \ Brg1EtOH=Brg1EtOH \ Brg1Dex=Brg1Dex \ GREtOH=GREtOH \ GRDex=GRDex \ Ku70EtOH=Ku70EtOH \ Ku70Dex=Ku70Dex sortOrder Group1=+ view=+ ## Views track coverage data track trotter1xJune0214View1 parent trotter1xJune0214 shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track InputEtOH_coverage_1x parent trotter1xJune0214View1 on bigDataUrl InputEtOH_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeTo1x-scale.bw shortLabel InputEtOH coverage longLabel InputEtOH coverage type bigWig color 127,127,127 priority 2402 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=InputEtOH view=COV ## Coverage track track InputDex_coverage_1x parent trotter1xJune0214View1 on bigDataUrl InputDex_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeTo1x-scale.bw shortLabel InputDex coverage longLabel InputDex coverage type bigWig color 77,77,77 priority 2404 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=InputDex view=COV ## Coverage track track BRG1EtOH_coverage_1x parent trotter1xJune0214View1 on bigDataUrl BRG1EtOH_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeTo1x-scale.bw shortLabel Brg1EtOH coverage longLabel Brg1EtOH coverage type bigWig color 30,100,185 priority 2406 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Brg1EtOH view=COV ## Coverage track track BRG1Dex_coverage_1x parent trotter1xJune0214View1 on bigDataUrl BRG1Dex_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeTo1x-scale.bw shortLabel Brg1Dex coverage longLabel Brg1Dex coverage type bigWig color 0,69,150 priority 2408 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Brg1Dex view=COV ## Coverage track track GREtOHBRG1_coverage_1x parent trotter1xJune0214View1 on bigDataUrl GREtOHBRG1_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeTo1x-scale.bw shortLabel GREtOH coverage longLabel GREtOH coverage type bigWig color 159,121,238 priority 2410 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=GREtOH view=COV ## Coverage track track GRDexBRG1_coverage_1x parent trotter1xJune0214View1 on bigDataUrl GRDexBRG1_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeTo1x-scale.bw shortLabel GRDex coverage longLabel GRDex coverage type bigWig color 138,43,226 priority 2412 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=GRDex view=COV ## Coverage track track Ku70EtOH_coverage_1x parent trotter1xJune0214View1 on bigDataUrl Ku70EtOH_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeTo1x-scale.bw shortLabel Ku70EtOH coverage longLabel Ku70EtOH coverage type bigWig color 32,178,170 priority 2414 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Ku70EtOH view=COV ## Coverage track track Ku70Dex_coverage_1x parent trotter1xJune0214View1 on bigDataUrl Ku70Dex_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeTo1x-scale.bw shortLabel Ku70Dex coverage longLabel Ku70Dex coverage type bigWig color 0,134,139 priority 2416 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Ku70Dex view=COV ## Views track for ChIPseq peaks track trotter1xJune0214View3 parent trotter1xJune0214 shortLabel Peaks view PEAK visibility pack type bigBed allButtonPair on centerLabelsDense on dragAndDrop on viewUi on # Peak track track Brg1EtOH_peaks parent trotter1xJune0214View3 on bigDataUrl BRG1EtOH_vs_InputEtOH.findPeaks_none.150.150_fdr0.01_p0.00001_foc0_loc300_fc4_minNA.bb shortLabel Brg1EtOH peaks longLabel Brg1EtOH peaks type bigBed visibility pack priority 2602 color 2,100,185 subGroups Group1=Brg1EtOH view=PEAK # Peak track track Brg1Dex_peaks parent trotter1xJune0214View3 on bigDataUrl BRG1Dex_vs_InputDex.findPeaks_none.150.150_fdr0.01_p0.00001_foc0_loc300_fc4_minNA.bb shortLabel Brg1Dex peaks longLabel Brg1Dex peaks type bigBed visibility pack priority 2604 color 0,69,150 subGroups Group1=Brg1Dex view=PEAK # Peak track track GREtOH_peaks parent trotter1xJune0214View3 on bigDataUrl GREtOHBRG1_vs_InputEtOH.findPeaks_none.150.150_fdr0.01_p0.00001_foc0_loc300_fc4_minNA.bb shortLabel GREtOH peaks longLabel GREtOH peaks type bigBed visibility pack priority 2606 color 159,121,238 subGroups Group1=GREtOH view=PEAK # Peak track track GRDex_peaks parent trotter1xJune0214View3 on bigDataUrl GRDexBRG1_vs_InputDex.findPeaks_none.150.150_fdr0.01_p0.00001_foc0_loc300_fc4_minNA.bb shortLabel GRDex peaks longLabel GRDex peaks type bigBed visibility pack priority 2608 color 138,43,226 subGroups Group1=GRDex view=PEAK # Peak track track Ku70EtOH_peaks parent trotter1xJune0214View3 on bigDataUrl Ku70EtOH_vs_InputEtOH.findPeaks_none.150.150_fdr0.01_p0.00001_foc0_loc300_fc4_minNA.bb shortLabel Ku70EtOH peaks longLabel Ku70EtOH peaks type bigBed visibility pack priority 2610 color 32,178,170 subGroups Group1=Ku70EtOH view=PEAK # Peak track track Ku70Dex_peaks parent trotter1xJune0214View3 on bigDataUrl Ku70Dex_vs_InputDex.findPeaks_none.150.150_fdr0.01_p0.00001_foc0_loc300_fc4_minNA.bb shortLabel Ku70Dex peaks longLabel Ku70Dex peaks type bigBed visibility pack priority 2612 color 0,134,139 subGroups Group1=Ku70Dex view=PEAK ## Beginning of track view track trotter1xOct2014 compositeTrack on shortLabel Trotter ChIPseq Oct2014 (1xRPGC) longLabel Trotter ChIPseq Oct2014 (1xRPGC) priority 2700 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage # PEAK=Peaks \ # JUNC=Junctions subGroup2 Group1 Group1 \ BRG1Dex15min=BRG1Dex15min \ BRG1EtOH15min=BRG1EtOH15min \ GRDex15min=GRDex15min \ GREtOH15min=GREtOH15min \ InputDex15min=InputDex15min \ InputEtOH15min=InputEtOH15min sortOrder Group1=+ view=+ ## Views track coverage data track trotter1xOct2014View1 parent trotter1xOct2014 shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track BRG1Dex15min_coverage parent trotter1xOct2014View1 on bigDataUrl BRG1Dex15min_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-nodupes-150-bin10-normalizeTo1x-scale.bw shortLabel BRG1Dex15min coverage longLabel BRG1Dex15min coverage type bigWig color 255,69,0 priority 2702 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=BRG1Dex15min view=COV ## Coverage track track BRG1EtOH15min_coverage parent trotter1xOct2014View1 on bigDataUrl BRG1EtOH15min_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-nodupes-150-bin10-normalizeTo1x-scale.bw shortLabel BRG1EtOH15min coverage longLabel BRG1EtOH15min coverage type bigWig color 255,140,105 priority 2704 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=BRG1EtOH15min view=COV ## Coverage track track GRDex15min_coverage parent trotter1xOct2014View1 on bigDataUrl GRDex15min_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-nodupes-150-bin10-normalizeTo1x-scale.bw shortLabel GRDex15min coverage longLabel GRDex15min coverage type bigWig color 138,43,226 priority 2706 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=GRDex15min view=COV ## Coverage track track GREtOH15min_coverage parent trotter1xOct2014View1 on bigDataUrl GREtOH15min_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-nodupes-150-bin10-normalizeTo1x-scale.bw shortLabel GREtOH15min coverage longLabel GREtOH15min coverage type bigWig color 159,121,238 priority 2708 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=GREtOH15min view=COV ## Coverage track track InputDex15min_coverage parent trotter1xOct2014View1 on bigDataUrl InputDex15min_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-nodupes-150-bin10-normalizeTo1x-scale.bw shortLabel InputDex15min coverage longLabel InputDex15min coverage type bigWig color 77,77,77 priority 2710 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=InputDex15min view=COV ## Coverage track track InputEtOH15min_coverage parent trotter1xOct2014View1 on bigDataUrl InputEtOH15min_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-nodupes-150-bin10-normalizeTo1x-scale.bw shortLabel InputEtOH15min coverage longLabel InputEtOH15min coverage type bigWig color 127,127,127 priority 2712 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=InputEtOH15min view=COV