## RNA-seq data coverage track set track hoffmanRnaseqSiBrg1Set compositeTrack on shortLabel Hoffman siBrg1 RNA-seq coverage, TopHat2 longLabel Hoffman siBrg1 RNA-seq coverage, TopHat2 type bigWig allButtonPair on centerLabelsDense on dragAndDrop on priority 20 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## RNA-seq data coverage tracks ## siBrg1 machine 2 track siBrg1_m2_r1 parent hoffmanRnaseqSiBrg1Set on bigDataUrl ES638-2_1.sanger.sickle.topHat2pe_hg19.bw description siBrg1_m2_r1 means siBrg1, machine 2, biological replicate 1, and is represented by the file ES638-2_1.sanger.sickle.topHat2pe_hg19.bw was created by trimming reads with Sickle, mapping to hg19 with TopHat2 v2.0.4, using iGenomes hg19 genes.gtf file, and inner mate pair distance 50. shortLabel RNA-seq siBrg1_m2_r1 longLabel RNA-seq siBrg1_m2_r1 type bigWig color 176,32,36 priority 821 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## siBrg1 machine 3 track siBrg1_m3_r1 parent hoffmanRnaseqSiBrg1Set on bigDataUrl ES638-3_1.sanger.sickle.topHat2pe_hg19.bw description siBrg1_m3_r1 means siBrg1, machine 3, biological replicate 1, and is represented by the file ES638-2_1.sanger.sickle.topHat2pe_hg19.bw was created by trimming reads with Sickle, mapping to hg19 with TopHat2 v2.0.4, using iGenomes hg19 genes.gtf file, and inner mate pair distance 50. shortLabel RNA-seq siBrg1_m3_r1 longLabel RNA-seq siBrg1_m3_r1 type bigWig color 176,32,36 priority 821 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## siBrg1 machine 2 track siBrg1_m2_r2 parent hoffmanRnaseqSiBrg1Set on bigDataUrl ES639-2_1.sanger.sickle.topHat2pe_hg19.bw description siBrg1_m2_r2 means siBrg1, machine 2, biological replicate 2, and is represented by the file ES639-2_1.sanger.sickle.topHat2pe_hg19.bw was created by trimming reads with Sickle, mapping to hg19 with TopHat2 v2.0.4, using iGenomes hg19 genes.gtf file, and inner mate pair distance 50. shortLabel RNA-seq siBrg1_m2_r2 longLabel RNA-seq siBrg1_m2_r2 type bigWig color 176,32,36 priority 821 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## siBrg1 machine 3 track siBrg1_m3_r2 parent hoffmanRnaseqSiBrg1Set on bigDataUrl ES639-3_1.sanger.sickle.topHat2pe_hg19.bw description siBrg1_m3_r2 means siBrg1, machine 3, biological replicate 2, and is represented by the file ES639-3_1.sanger.sickle.topHat2pe_hg19.bw was created by trimming reads with Sickle, mapping to hg19 with TopHat2 v2.0.4, using iGenomes hg19 genes.gtf file, and inner mate pair distance 50. shortLabel RNA-seq siBrg1_m3_r2 longLabel RNA-seq siBrg1_m3_r2 type bigWig color 176,32,36 priority 821 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## siBrg1 machine 2 track siBrg1_m2_r3 parent hoffmanRnaseqSiBrg1Set on bigDataUrl ES640-2_1.sanger.sickle.topHat2pe_hg19.bw description siBrg1_m2_r3 means siBrg1, machine 2, biological replicate 3, and is represented by the file ES640-2_1.sanger.sickle.topHat2pe_hg19.bw was created by trimming reads with Sickle, mapping to hg19 with TopHat2 v2.0.4, using iGenomes hg19 genes.gtf file, and inner mate pair distance 50. shortLabel RNA-seq siBrg1_m2_r3 longLabel RNA-seq siBrg1_m2_r3 type bigWig color 176,32,36 priority 821 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## siBrg1 machine 3 track siBrg1_m3_r3 parent hoffmanRnaseqSiBrg1Set on bigDataUrl ES640-3_1.sanger.sickle.topHat2pe_hg19.bw description siBrg1_m3_r3 means siBrg1, machine 3, biological replicate 3, and is represented by the file ES640-3_1.sanger.sickle.topHat2pe_hg19.bw was created by trimming reads with Sickle, mapping to hg19 with TopHat2 v2.0.4, using iGenomes hg19 genes.gtf file, and inner mate pair distance 50. shortLabel RNA-seq siBrg1_m3_r3 longLabel RNA-seq siBrg1_m3_r3 type bigWig color 176,32,36 priority 821 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## Control machine 2 track Control_m2_r1 parent hoffmanRnaseqSiBrg1Set on bigDataUrl ES641-2_1.sanger.sickle.topHat2pe_hg19.bw description Control_m2_r1 means control, machine 2, biological replicate 1, and is represented by the file ES641-2_1.sanger.sickle.topHat2pe_hg19.bw was created by trimming reads with Sickle, mapping to hg19 with TopHat2 v2.0.4, using iGenomes hg19 genes.gtf file, and inner mate pair distance 50. shortLabel RNA-seq Control_m2_r1 longLabel RNA-seq Control_m2_r1 type bigWig color 110,110,140 priority 821 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## Control machine 3 track Control_m3_r1 parent hoffmanRnaseqSiBrg1Set on bigDataUrl ES641-3_1.sanger.sickle.topHat2pe_hg19.bw description Control_m3_r1 means control, machine 3, biological replicate 1, and is represented by the file ES641-3_1.sanger.sickle.topHat2pe_hg19.bw was created by trimming reads with Sickle, mapping to hg19 with TopHat2 v2.0.4, using iGenomes hg19 genes.gtf file, and inner mate pair distance 50. shortLabel RNA-seq Control_m3_r1 longLabel RNA-seq Control_m3_r1 type bigWig color 110,110,140 priority 821 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## Control machine 2 track Control_m2_r2 parent hoffmanRnaseqSiBrg1Set on bigDataUrl ES642-2_1.sanger.sickle.topHat2pe_hg19.bw description Control_m2_r2 means control, machine 2, biological replicate 2, and is represented by the file ES642-2_1.sanger.sickle.topHat2pe_hg19.bw was created by trimming reads with Sickle, mapping to hg19 with TopHat2 v2.0.4, using iGenomes hg19 genes.gtf file, and inner mate pair distance 50. shortLabel RNA-seq Control_m2_r2 longLabel RNA-seq Control_m2_r2 type bigWig color 110,110,140 priority 821 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## Control machine 3 track Control_m3_r2 parent hoffmanRnaseqSiBrg1Set on bigDataUrl ES642-3_1.sanger.sickle.topHat2pe_hg19.bw description Control_m3_r2 means control, machine 3, biological replicate 2, and is represented by the file ES642-3_1.sanger.sickle.topHat2pe_hg19.bw was created by trimming reads with Sickle, mapping to hg19 with TopHat2 v2.0.4, using iGenomes hg19 genes.gtf file, and inner mate pair distance 50. shortLabel RNA-seq Control_m3_r2 longLabel RNA-seq Control_m3_r2 type bigWig color 110,110,140 priority 821 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## Control machine 2 track Control_m2_r3 parent hoffmanRnaseqSiBrg1Set on bigDataUrl ES643-2_1.sanger.sickle.topHat2pe_hg19.bw description Control_m2_r3 means control, machine 2, biological replicate 3, and is represented by the file ES643-2_1.sanger.sickle.topHat2pe_hg19.bw was created by trimming reads with Sickle, mapping to hg19 with TopHat2 v2.0.4, using iGenomes hg19 genes.gtf file, and inner mate pair distance 50. shortLabel RNA-seq Control_m2_r3 longLabel RNA-seq Control_m2_r3 type bigWig color 110,110,140 priority 821 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## Control machine 3 track Control_m3_r3 parent hoffmanRnaseqSiBrg1Set on bigDataUrl ES643-3_1.sanger.sickle.topHat2pe_hg19.bw description Control_m3_r3 means control, machine 3, biological replicate 3, and is represented by the file ES643-3_1.sanger.sickle.topHat2pe_hg19.bw was created by trimming reads with Sickle, mapping to hg19 with TopHat2 v2.0.4, using iGenomes hg19 genes.gtf file, and inner mate pair distance 50. shortLabel RNA-seq Control_m3_r3 longLabel RNA-seq Control_m3_r3 type bigWig color 110,110,140 priority 821 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full