##================================================================== ## Beginning of track view of Dataset EAjuly182017 ##------------------------------------------------------------------ ## RNAseq Dataset: EAjuly182017 track EAjuly182017MouseFemaleKO compositeTrack on shortLabel EAjuly182017MouseFemaleKO Stranded RNAseq longLabel mm10 Stranded RNAseq project EAjuly182017MouseFemaleKO priority 1000 visibility full configurable on type bed 3 subGroup1 view Views COV=Coverage JUNC=Junctions subGroup2 Group1 Group1 \ WT=WT KO=KO subGroup3 Group2 Group2 \ MouseFemaleKO=MouseFemaleKO subGroup4 Group3 Group3 \ s1Pos=s1Pos s2Neg=s2Neg dimensions dimX=Group1 dimY=Group2 sortOrder Group1=+ Group2=+ Group3=+ view=+ ## ==================== ## Views track coverage data track EAjuly182017MouseFemaleKOView1 parent EAjuly182017MouseFemaleKO shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 viewUi on ##-------- ## Coverage track track KO_1_1067EA.s1Pos_coverage parent EAjuly182017MouseFemaleKOView1 on bigDataUrl KO_1_1067EA.s1Pos.bw shortLabel KO_1_1067EA.s1Pos_coverage longLabel KO_1_1067EA.s1.Pos_coverage stranded plus bw type bigWig color 153,0,76, priority 1012 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=KO Group2=MouseFemaleKO Group3=s1Pos view=COV ## Coverage track track KO_1_1067EA.s2Neg_coverage parent EAjuly182017MouseFemaleKOView1 on bigDataUrl KO_1_1067EA.s2Neg.bw shortLabel KO_1_1067EA.s2Neg_coverage longLabel KO_1_1067EA.s2Neg_coverage stranded minus bw type bigWig color 255,0,255, priority 1014 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=KO Group2=MouseFemaleKO Group3=s2Neg view=COV ##-------- ## Coverage track track KO_2_1074EA.s1Pos_coverage parent EAjuly182017MouseFemaleKOView1 on bigDataUrl KO_2_1074EA.s1Pos.bw shortLabel KO_2_1074EA.s1Pos_coverage longLabel KO_2_1074EA.s1.Pos_coverage stranded plus bw type bigWig color 153,0,76, priority 1022 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=KO Group2=MouseFemaleKO Group3=s1Pos view=COV ## Coverage track track KO_2_1074EA.s2Neg_coverage parent EAjuly182017MouseFemaleKOView1 on bigDataUrl KO_2_1074EA.s2Neg.bw shortLabel KO_2_1074EA.s2Neg_coverage longLabel KO_2_1074EA.s2Neg_coverage stranded minus bw type bigWig color 255,0,255, priority 1024 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=KO Group2=MouseFemaleKO Group3=s2Neg view=COV ##-------- ## Coverage track track KO_3_1093EA.s1Pos_coverage parent EAjuly182017MouseFemaleKOView1 on bigDataUrl KO_3_1093EA.s1Pos.bw shortLabel KO_3_1093EA.s1Pos_coverage longLabel KO_3_1093EA.s1.Pos_coverage stranded plus bw type bigWig color 153,0,76, priority 1032 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=KO Group2=MouseFemaleKO Group3=s1Pos view=COV ## Coverage track track KO_3_1093EA.s2Neg_coverage parent EAjuly182017MouseFemaleKOView1 on bigDataUrl KO_3_1093EA.s2Neg.bw shortLabel KO_3_1093EA.s2Neg_coverage longLabel KO_3_1093EA.s2Neg_coverage stranded minus bw type bigWig color 255,0,255, priority 1034 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=KO Group2=MouseFemaleKO Group3=s2Neg view=COV ##-------- ## Coverage track track KO_4_1101EA.s1Pos_coverage parent EAjuly182017MouseFemaleKOView1 on bigDataUrl KO_4_1101EA.s1Pos.bw shortLabel KO_4_1101EA.s1Pos_coverage longLabel KO_4_1101EA.s1.Pos_coverage stranded plus bw type bigWig color 153,0,76, priority 1042 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=KO Group2=MouseFemaleKO Group3=s1Pos view=COV ## Coverage track track KO_4_1101EA.s2Neg_coverage parent EAjuly182017MouseFemaleKOView1 on bigDataUrl KO_4_1101EA.s2Neg.bw shortLabel KO_4_1101EA.s2Neg_coverage longLabel KO_4_1101EA.s2Neg_coverage stranded minus bw type bigWig color 255,0,255, priority 1044 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=KO Group2=MouseFemaleKO Group3=s2Neg view=COV ##-------- ## Coverage track track WT_1_1065EA.s1Pos_coverage parent EAjuly182017MouseFemaleKOView1 on bigDataUrl WT_1_1065EA.s1Pos.bw shortLabel WT_1_1065EA.s1Pos_coverage longLabel WT_1_1065EA.s1.Pos_coverage stranded plus bw type bigWig color 76,0,153, priority 1052 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=WT Group2=MouseFemaleKO Group3=s1Pos view=COV ## Coverage track track WT_1_1065EA.s2Neg_coverage parent EAjuly182017MouseFemaleKOView1 on bigDataUrl WT_1_1065EA.s2Neg.bw shortLabel WT_1_1065EA.s2Neg_coverage longLabel WT_1_1065EA.s2Neg_coverage stranded minus bw type bigWig color 153,51,255, priority 1054 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=WT Group2=MouseFemaleKO Group3=s2Neg view=COV ##-------- ## Coverage track track WT_2_1073EA.s1Pos_coverage parent EAjuly182017MouseFemaleKOView1 on bigDataUrl WT_2_1073EA.s1Pos.bw shortLabel WT_2_1073EA.s1Pos_coverage longLabel WT_2_1073EA.s1.Pos_coverage stranded plus bw type bigWig color 76,0,153, priority 1062 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=WT Group2=MouseFemaleKO Group3=s1Pos view=COV ## Coverage track track WT_2_1073EA.s2Neg_coverage parent EAjuly182017MouseFemaleKOView1 on bigDataUrl WT_2_1073EA.s2Neg.bw shortLabel WT_2_1073EA.s2Neg_coverage longLabel WT_2_1073EA.s2Neg_coverage stranded minus bw type bigWig color 153,51,255, priority 1064 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=WT Group2=MouseFemaleKO Group3=s2Neg view=COV ##-------- ## Coverage track track WT_3_1092EA.s1Pos_coverage parent EAjuly182017MouseFemaleKOView1 on bigDataUrl WT_3_1092EA.s1Pos.bw shortLabel WT_3_1092EA.s1Pos_coverage longLabel WT_3_1092EA.s1.Pos_coverage stranded plus bw type bigWig color 76,0,153, priority 1072 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=WT Group2=MouseFemaleKO Group3=s1Pos view=COV ## Coverage track track WT_3_1092EA.s2Neg_coverage parent EAjuly182017MouseFemaleKOView1 on bigDataUrl WT_3_1092EA.s2Neg.bw shortLabel WT_3_1092EA.s2Neg_coverage longLabel WT_3_1092EA.s2Neg_coverage stranded minus bw type bigWig color 153,51,255, priority 1074 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=WT Group2=MouseFemaleKO Group3=s2Neg view=COV ##-------- ## Coverage track track WT_4_1102EA.s1Pos_coverage parent EAjuly182017MouseFemaleKOView1 on bigDataUrl WT_4_1102EA.s1Pos.bw shortLabel WT_4_1102EA.s1Pos_coverage longLabel WT_4_1102EA.s1.Pos_coverage stranded plus bw type bigWig color 76,0,153, priority 1082 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=WT Group2=MouseFemaleKO Group3=s1Pos view=COV ## Coverage track track WT_4_1102EA.s2Neg_coverage parent EAjuly182017MouseFemaleKOView1 on bigDataUrl WT_4_1102EA.s2Neg.bw shortLabel WT_4_1102EA.s2Neg_coverage longLabel WT_4_1102EA.s2Neg_coverage stranded minus bw type bigWig color 153,51,255, priority 1084 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=WT Group2=MouseFemaleKO Group3=s2Neg view=COV ## ==================== ## Views track for RNAseq, junctions data track EAjuly182017MouseFemaleKOView2 parent EAjuly182017MouseFemaleKO shortLabel RNAseq_junctions view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 20 scoreFilterLimits 1:1000 viewUi on ##-------- # combined junctions track track KO_1_1067EA_junctions parent EAjuly182017MouseFemaleKOView2 on bigDataUrl KO_1_1067EA.bb shortLabel KO_1_1067EA junctions longLabel KO_1_1067EA junctions type bigBed 12 visibility pack priority 1092 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=KO Group2=MouseFemaleKO Group3=Stranded view=JUNC ##-------- # combined junctions track track KO_2_1074EA_junctions parent EAjuly182017MouseFemaleKOView2 on bigDataUrl KO_2_1074EA.bb shortLabel KO_2_1074EA junctions longLabel KO_2_1074EA junctions type bigBed 12 visibility pack priority 1102 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=KO Group2=MouseFemaleKO Group3=Stranded view=JUNC ##-------- # combined junctions track track KO_3_1093EA_junctions parent EAjuly182017MouseFemaleKOView2 on bigDataUrl KO_3_1093EA.bb shortLabel KO_3_1093EA junctions longLabel KO_3_1093EA junctions type bigBed 12 visibility pack priority 1112 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=KO Group2=MouseFemaleKO Group3=Stranded view=JUNC ##-------- # combined junctions track track KO_4_1101EA_junctions parent EAjuly182017MouseFemaleKOView2 on bigDataUrl KO_4_1101EA.bb shortLabel KO_4_1101EA junctions longLabel KO_4_1101EA junctions type bigBed 12 visibility pack priority 1122 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=KO Group2=MouseFemaleKO Group3=Stranded view=JUNC ##-------- # combined junctions track track WT_1_1065EA_junctions parent EAjuly182017MouseFemaleKOView2 on bigDataUrl WT_1_1065EA.bb shortLabel WT_1_1065EA junctions longLabel WT_1_1065EA junctions type bigBed 12 visibility pack priority 1132 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=WT Group2=MouseFemaleKO Group3=Stranded view=JUNC ##-------- # combined junctions track track WT_2_1073EA_junctions parent EAjuly182017MouseFemaleKOView2 on bigDataUrl WT_2_1073EA.bb shortLabel WT_2_1073EA junctions longLabel WT_2_1073EA junctions type bigBed 12 visibility pack priority 1142 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=WT Group2=MouseFemaleKO Group3=Stranded view=JUNC ##-------- # combined junctions track track WT_3_1092EA_junctions parent EAjuly182017MouseFemaleKOView2 on bigDataUrl WT_3_1092EA.bb shortLabel WT_3_1092EA junctions longLabel WT_3_1092EA junctions type bigBed 12 visibility pack priority 1152 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=WT Group2=MouseFemaleKO Group3=Stranded view=JUNC ##-------- # combined junctions track track WT_4_1102EA_junctions parent EAjuly182017MouseFemaleKOView2 on bigDataUrl WT_4_1102EA.bb shortLabel WT_4_1102EA junctions longLabel WT_4_1102EA junctions type bigBed 12 visibility pack priority 1162 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=WT Group2=MouseFemaleKO Group3=Stranded view=JUNC