## Beginning of track view track NG162WTLiver compositeTrack on shortLabel NG162 WT Liver longLabel NG162 WT Liver priority 2200 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ PEAK=Peaks \ JUNC=Junctions subGroup2 Group1 Group1 \ WT_Liver=WT_Liver \ TTPKO_Liver=TTPKO_Liver sortOrder Group1=+ view=+ ## Views track coverage data track NG162WTLiverView1 parent NG162WTLiver shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track ES1287_coverage parent NG162WTLiverView1 on bigDataUrl ES1287_1.merged.filt.fastq.STAR_mm10.sortedByCoord.bw shortLabel WT_Liver ES1287 coverage longLabel WT_Liver ES1287 coverage type bigWig color 207,73,82 priority 2202 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=WT_Liver view=COV ## Coverage track track ES1288_coverage parent NG162WTLiverView1 on bigDataUrl ES1288_1.merged.filt.fastq.STAR_mm10.sortedByCoord.bw shortLabel WT_Liver ES1288 coverage longLabel WT_Liver ES1288 coverage type bigWig color 199,58,68 priority 2204 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=WT_Liver view=COV ## Coverage track track ES1289_coverage parent NG162WTLiverView1 on bigDataUrl ES1289_1.merged.filt.fastq.STAR_mm10.sortedByCoord.bw shortLabel WT_Liver ES1289 coverage longLabel WT_Liver ES1289 coverage type bigWig color 191,45,55 priority 2206 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=WT_Liver view=COV ## Coverage track track ES1290_coverage parent NG162WTLiverView1 on bigDataUrl ES1290_1.merged.filt.fastq.STAR_mm10.sortedByCoord.bw shortLabel WT_Liver ES1290 coverage longLabel WT_Liver ES1290 coverage type bigWig color 177,26,36 priority 2208 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=WT_Liver view=COV ## Coverage track track ES1291_coverage parent NG162WTLiverView1 on bigDataUrl ES1291_1.merged.filt.fastq.STAR_mm10.sortedByCoord.bw shortLabel TTPKO_Liver ES1291 coverage longLabel TTPKO_Liver ES1291 coverage type bigWig color 250,166,46 priority 2210 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=TTPKO_Liver view=COV ## Coverage track track ES1292_coverage parent NG162WTLiverView1 on bigDataUrl ES1292_1.merged.filt.fastq.STAR_mm10.sortedByCoord.bw shortLabel TTPKO_Liver ES1292 coverage longLabel TTPKO_Liver ES1292 coverage type bigWig color 249,156,24 priority 2212 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=TTPKO_Liver view=COV ## Coverage track track ES1293_coverage parent NG162WTLiverView1 on bigDataUrl ES1293_1.merged.filt.fastq.STAR_mm10.sortedByCoord.bw shortLabel TTPKO_Liver ES1293 coverage longLabel TTPKO_Liver ES1293 coverage type bigWig color 248,147,3 priority 2214 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=TTPKO_Liver view=COV ## Coverage track track ES1294_coverage parent NG162WTLiverView1 on bigDataUrl ES1294_1.merged.filt.fastq.STAR_mm10.sortedByCoord.bw shortLabel TTPKO_Liver ES1294 coverage longLabel TTPKO_Liver ES1294 coverage type bigWig color 227,134,2 priority 2216 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=TTPKO_Liver view=COV ## Coverage track track WT_Liver_coverage parent NG162WTLiverView1 on bigDataUrl WT_Liver_union.STAR_mm10.bw shortLabel WT_Liver coverage longLabel WT_Liver coverage type bigWig color 162,10,20 priority 2218 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=WT_Liver view=COV ## Coverage track track TTPKO_Liver_coverage parent NG162WTLiverView1 on bigDataUrl TTPKO_Liver_union.STAR_mm10.bw shortLabel TTPKO_Liver coverage longLabel TTPKO_Liver coverage type bigWig color 205,121,1 priority 2220 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=TTPKO_Liver view=COV ## Views track for RNAseq, junctions data track NG162WTLiverView2 parent NG162WTLiver shortLabel RNAseq_junctions view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 20 scoreFilterLimits 1:1000 viewUi on # combined junctions track track ES1287_junctions parent NG162WTLiverView2 on bigDataUrl ES1287_1.merged.filt.fastq.STAR_mm10.sorted.bb shortLabel WT_Liver ES1287 junctions longLabel WT_Liver ES1287 junctions type bigBed 12 visibility pack priority 2222 scoreMin 10 scoreMax 100 color 207,73,82 subGroups Group1=WT_Liver view=JUNC # combined junctions track track ES1288_junctions parent NG162WTLiverView2 on bigDataUrl ES1288_1.merged.filt.fastq.STAR_mm10.sorted.bb shortLabel WT_Liver ES1288 junctions longLabel WT_Liver ES1288 junctions type bigBed 12 visibility pack priority 2224 scoreMin 10 scoreMax 100 color 199,58,68 subGroups Group1=WT_Liver view=JUNC # combined junctions track track ES1289_junctions parent NG162WTLiverView2 on bigDataUrl ES1289_1.merged.filt.fastq.STAR_mm10.sorted.bb shortLabel WT_Liver ES1289 junctions longLabel WT_Liver ES1289 junctions type bigBed 12 visibility pack priority 2226 scoreMin 10 scoreMax 100 color 191,45,55 subGroups Group1=WT_Liver view=JUNC # combined junctions track track ES1290_junctions parent NG162WTLiverView2 on bigDataUrl ES1290_1.merged.filt.fastq.STAR_mm10.sorted.bb shortLabel WT_Liver ES1290 junctions longLabel WT_Liver ES1290 junctions type bigBed 12 visibility pack priority 2228 scoreMin 10 scoreMax 100 color 177,26,36 subGroups Group1=WT_Liver view=JUNC # combined junctions track track ES1291_junctions parent NG162WTLiverView2 on bigDataUrl ES1291_1.merged.filt.fastq.STAR_mm10.sorted.bb shortLabel TTPKO_Liver ES1291 junctions longLabel TTPKO_Liver ES1291 junctions type bigBed 12 visibility pack priority 2230 scoreMin 10 scoreMax 100 color 250,166,46 subGroups Group1=TTPKO_Liver view=JUNC # combined junctions track track ES1292_junctions parent NG162WTLiverView2 on bigDataUrl ES1292_1.merged.filt.fastq.STAR_mm10.sorted.bb shortLabel TTPKO_Liver ES1292 junctions longLabel TTPKO_Liver ES1292 junctions type bigBed 12 visibility pack priority 2232 scoreMin 10 scoreMax 100 color 249,156,24 subGroups Group1=TTPKO_Liver view=JUNC # combined junctions track track ES1293_junctions parent NG162WTLiverView2 on bigDataUrl ES1293_1.merged.filt.fastq.STAR_mm10.sorted.bb shortLabel TTPKO_Liver ES1293 junctions longLabel TTPKO_Liver ES1293 junctions type bigBed 12 visibility pack priority 2234 scoreMin 10 scoreMax 100 color 248,147,3 subGroups Group1=TTPKO_Liver view=JUNC # combined junctions track track ES1294_junctions parent NG162WTLiverView2 on bigDataUrl ES1294_1.merged.filt.fastq.STAR_mm10.sorted.bb shortLabel TTPKO_Liver ES1294 junctions longLabel TTPKO_Liver ES1294 junctions type bigBed 12 visibility pack priority 2236 scoreMin 10 scoreMax 100 color 227,134,2 subGroups Group1=TTPKO_Liver view=JUNC # combined junctions track track WT_Liver_junctions parent NG162WTLiverView2 on bigDataUrl WT_Liver.STAR_mm10.combinedJunctions.sorted.bb shortLabel WT_Liver junctions longLabel WT_Liver junctions type bigBed 12 visibility pack priority 2238 scoreMin 10 scoreMax 100 color 162,10,20 subGroups Group1=WT_Liver view=JUNC # combined junctions track track TTPKO_Liver_junctions parent NG162WTLiverView2 on bigDataUrl TTPKO_Liver.STAR_mm10.combinedJunctions.sorted.bb shortLabel TTPKO_Liver junctions longLabel TTPKO_Liver junctions type bigBed 12 visibility pack priority 2240 scoreMin 10 scoreMax 100 color 205,121,1 subGroups Group1=TTPKO_Liver view=JUNC