## Beginning of track view track NG164WTColon compositeTrack on shortLabel NG164 WT Colon longLabel NG164 WT Colon priority 2200 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ PEAK=Peaks \ JUNC=Junctions subGroup2 Group1 Group1 \ WT_Colon=WT_Colon \ TTPKO_Colon=TTPKO_Colon sortOrder Group1=+ view=+ ## Views track coverage data track NG164WTColonView1 parent NG164WTColon shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track ES1303_coverage parent NG164WTColonView1 on bigDataUrl ES1303_1.merged.filt.fastq.STAR_mm10.sortedByCoord.bw shortLabel WT_Colon ES1303 coverage longLabel WT_Colon ES1303 coverage type bigWig color 207,73,82 priority 2202 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=WT_Colon view=COV ## Coverage track track ES1304_coverage parent NG164WTColonView1 on bigDataUrl ES1304_1.merged.filt.fastq.STAR_mm10.sortedByCoord.bw shortLabel WT_Colon ES1304 coverage longLabel WT_Colon ES1304 coverage type bigWig color 199,58,68 priority 2204 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=WT_Colon view=COV ## Coverage track track ES1305_coverage parent NG164WTColonView1 on bigDataUrl ES1305_1.merged.filt.fastq.STAR_mm10.sortedByCoord.bw shortLabel WT_Colon ES1305 coverage longLabel WT_Colon ES1305 coverage type bigWig color 191,45,55 priority 2206 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=WT_Colon view=COV ## Coverage track track ES1306_coverage parent NG164WTColonView1 on bigDataUrl ES1306_1.merged.filt.fastq.STAR_mm10.sortedByCoord.bw shortLabel WT_Colon ES1306 coverage longLabel WT_Colon ES1306 coverage type bigWig color 177,26,36 priority 2208 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=WT_Colon view=COV ## Coverage track track ES1307_coverage parent NG164WTColonView1 on bigDataUrl ES1307_1.merged.filt.fastq.STAR_mm10.sortedByCoord.bw shortLabel TTPKO_Colon ES1307 coverage longLabel TTPKO_Colon ES1307 coverage type bigWig color 250,166,46 priority 2210 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=TTPKO_Colon view=COV ## Coverage track track ES1308_coverage parent NG164WTColonView1 on bigDataUrl ES1308_1.merged.filt.fastq.STAR_mm10.sortedByCoord.bw shortLabel TTPKO_Colon ES1308 coverage longLabel TTPKO_Colon ES1308 coverage type bigWig color 249,156,24 priority 2212 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=TTPKO_Colon view=COV ## Coverage track track ES1309_coverage parent NG164WTColonView1 on bigDataUrl ES1309_1.merged.filt.fastq.STAR_mm10.sortedByCoord.bw shortLabel TTPKO_Colon ES1309 coverage longLabel TTPKO_Colon ES1309 coverage type bigWig color 248,147,3 priority 2214 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=TTPKO_Colon view=COV ## Coverage track track ES1310_coverage parent NG164WTColonView1 on bigDataUrl ES1310_1.merged.filt.fastq.STAR_mm10.sortedByCoord.bw shortLabel TTPKO_Colon ES1310 coverage longLabel TTPKO_Colon ES1310 coverage type bigWig color 227,134,2 priority 2216 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=TTPKO_Colon view=COV ## Coverage track track WT_Colon_coverage parent NG164WTColonView1 on bigDataUrl WT_Colon_union.STAR_mm10.bw shortLabel WT_Colon coverage longLabel WT_Colon coverage type bigWig color 162,10,20 priority 2218 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=WT_Colon view=COV ## Coverage track track TTPKO_Colon_coverage parent NG164WTColonView1 on bigDataUrl TTPKO_Colon_union.STAR_mm10.bw shortLabel TTPKO_Colon coverage longLabel TTPKO_Colon coverage type bigWig color 205,121,1 priority 2220 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=TTPKO_Colon view=COV ## Views track for RNAseq, junctions data track NG164WTColonView2 parent NG164WTColon shortLabel RNAseq_junctions view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 20 scoreFilterLimits 1:1000 viewUi on # combined junctions track track ES1303_junctions parent NG164WTColonView2 on bigDataUrl ES1303_1.merged.filt.fastq.STAR_mm10.sorted.bb shortLabel WT_Colon ES1303 junctions longLabel WT_Colon ES1303 junctions type bigBed 12 visibility pack priority 2222 scoreMin 10 scoreMax 100 color 207,73,82 subGroups Group1=WT_Colon view=JUNC # combined junctions track track ES1304_junctions parent NG164WTColonView2 on bigDataUrl ES1304_1.merged.filt.fastq.STAR_mm10.sorted.bb shortLabel WT_Colon ES1304 junctions longLabel WT_Colon ES1304 junctions type bigBed 12 visibility pack priority 2224 scoreMin 10 scoreMax 100 color 199,58,68 subGroups Group1=WT_Colon view=JUNC # combined junctions track track ES1305_junctions parent NG164WTColonView2 on bigDataUrl ES1305_1.merged.filt.fastq.STAR_mm10.sorted.bb shortLabel WT_Colon ES1305 junctions longLabel WT_Colon ES1305 junctions type bigBed 12 visibility pack priority 2226 scoreMin 10 scoreMax 100 color 191,45,55 subGroups Group1=WT_Colon view=JUNC # combined junctions track track ES1306_junctions parent NG164WTColonView2 on bigDataUrl ES1306_1.merged.filt.fastq.STAR_mm10.sorted.bb shortLabel WT_Colon ES1306 junctions longLabel WT_Colon ES1306 junctions type bigBed 12 visibility pack priority 2228 scoreMin 10 scoreMax 100 color 177,26,36 subGroups Group1=WT_Colon view=JUNC # combined junctions track track ES1307_junctions parent NG164WTColonView2 on bigDataUrl ES1307_1.merged.filt.fastq.STAR_mm10.sorted.bb shortLabel TTPKO_Colon ES1307 junctions longLabel TTPKO_Colon ES1307 junctions type bigBed 12 visibility pack priority 2230 scoreMin 10 scoreMax 100 color 250,166,46 subGroups Group1=TTPKO_Colon view=JUNC # combined junctions track track ES1308_junctions parent NG164WTColonView2 on bigDataUrl ES1308_1.merged.filt.fastq.STAR_mm10.sorted.bb shortLabel TTPKO_Colon ES1308 junctions longLabel TTPKO_Colon ES1308 junctions type bigBed 12 visibility pack priority 2232 scoreMin 10 scoreMax 100 color 249,156,24 subGroups Group1=TTPKO_Colon view=JUNC # combined junctions track track ES1309_junctions parent NG164WTColonView2 on bigDataUrl ES1309_1.merged.filt.fastq.STAR_mm10.sorted.bb shortLabel TTPKO_Colon ES1309 junctions longLabel TTPKO_Colon ES1309 junctions type bigBed 12 visibility pack priority 2234 scoreMin 10 scoreMax 100 color 248,147,3 subGroups Group1=TTPKO_Colon view=JUNC # combined junctions track track ES1310_junctions parent NG164WTColonView2 on bigDataUrl ES1310_1.merged.filt.fastq.STAR_mm10.sorted.bb shortLabel TTPKO_Colon ES1310 junctions longLabel TTPKO_Colon ES1310 junctions type bigBed 12 visibility pack priority 2236 scoreMin 10 scoreMax 100 color 227,134,2 subGroups Group1=TTPKO_Colon view=JUNC # combined junctions track track WT_Colon_junctions parent NG164WTColonView2 on bigDataUrl WT_Colon.STAR_mm10.combinedJunctions.sorted.bb shortLabel WT_Colon junctions longLabel WT_Colon junctions type bigBed 12 visibility pack priority 2238 scoreMin 10 scoreMax 100 color 162,10,20 subGroups Group1=WT_Colon view=JUNC # combined junctions track track TTPKO_Colon_junctions parent NG164WTColonView2 on bigDataUrl TTPKO_Colon.STAR_mm10.combinedJunctions.sorted.bb shortLabel TTPKO_Colon junctions longLabel TTPKO_Colon junctions type bigBed 12 visibility pack priority 2240 scoreMin 10 scoreMax 100 color 205,121,1 subGroups Group1=TTPKO_Colon view=JUNC