Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 4016)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 44987)	% of Background Sequences with Motif
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-452	-1.042e+03	0.0000	1104.0	27.49%	2388.8	5.31%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq/Homer	GATGASTCATCN	1e-436	-1.006e+03	0.0000	659.0	16.41%	701.9	1.56%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq/Homer	WAAGTAAACA	1e-224	-5.159e+02	0.0000	951.0	23.68%	3334.2	7.42%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq/Homer	CYTGTTTACWYW	1e-217	-5.013e+02	0.0000	794.0	19.77%	2436.6	5.42%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-216	-4.982e+02	0.0000	1047.0	26.07%	4059.5	9.03%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-195	-4.512e+02	0.0000	383.0	9.54%	583.2	1.30%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-192	-4.425e+02	0.0000	832.0	20.72%	2925.9	6.51%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-116	-2.678e+02	0.0000	690.0	17.18%	2942.5	6.55%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-104	-2.412e+02	0.0000	404.0	10.06%	1253.1	2.79%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-72	-1.679e+02	0.0000	111.0	2.76%	115.4	0.26%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq/Homer	CTGTTTAC	1e-54	-1.266e+02	0.0000	999.0	24.88%	6885.7	15.32%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq/Homer	GATGACTCAGCA	1e-52	-1.207e+02	0.0000	102.0	2.54%	153.8	0.34%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-50	-1.164e+02	0.0000	557.0	13.87%	3173.9	7.06%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq/Homer	AYAGTGCCMYCTRGTGGCCA	1e-45	-1.058e+02	0.0000	165.0	4.11%	478.8	1.07%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-43	-1.000e+02	0.0000	83.0	2.07%	122.1	0.27%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-38	-8.761e+01	0.0000	203.0	5.05%	789.3	1.76%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-27	-6.430e+01	0.0000	439.0	10.93%	2824.4	6.28%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-25	-5.867e+01	0.0000	96.0	2.39%	292.7	0.65%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	ATGATGCAAT	1e-22	-5.254e+01	0.0000	146.0	3.64%	636.2	1.42%
BORIS(Zf)/K562-CTCFL-ChIP-Seq/Homer	CNNBRGCGCCCCCTGSTGGC	1e-21	-4.906e+01	0.0000	227.0	5.65%	1264.1	2.81%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-21	-4.888e+01	0.0000	425.0	10.58%	2939.0	6.54%
Klf4(Zf)/mES-Klf4-ChIP-Seq/Homer	GCCACACCCA	1e-20	-4.707e+01	0.0000	349.0	8.69%	2300.3	5.12%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-20	-4.633e+01	0.0000	66.0	1.64%	180.8	0.40%
NF1(CTF)/LNCAP-NF1-ChIP-Seq/Homer	CYTGGCABNSTGCCAR	1e-19	-4.604e+01	0.0000	266.0	6.62%	1613.5	3.59%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-19	-4.468e+01	0.0000	1285.0	32.00%	11489.9	25.56%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-19	-4.451e+01	0.0000	122.0	3.04%	529.4	1.18%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-18	-4.264e+01	0.0000	91.0	2.27%	339.0	0.75%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-18	-4.228e+01	0.0000	349.0	8.69%	2375.4	5.28%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq/Homer	RGCCATTAAC	1e-18	-4.189e+01	0.0000	1641.0	40.86%	15360.7	34.17%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-18	-4.165e+01	0.0000	145.0	3.61%	713.9	1.59%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-16	-3.693e+01	0.0000	411.0	10.23%	3029.9	6.74%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-15	-3.558e+01	0.0000	636.0	15.84%	5196.0	11.56%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq/Homer	YCATYAATCA	1e-15	-3.538e+01	0.0000	406.0	10.11%	3014.3	6.71%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCATCY	1e-15	-3.474e+01	0.0000	104.0	2.59%	477.0	1.06%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-14	-3.405e+01	0.0000	156.0	3.88%	869.0	1.93%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq/Homer	RACCGGAAGT	1e-14	-3.316e+01	0.0000	509.0	12.67%	4031.9	8.97%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq/Homer	YTGCCAAG	1e-14	-3.245e+01	0.0000	839.0	20.89%	7307.6	16.26%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-13	-3.210e+01	0.0000	53.0	1.32%	166.2	0.37%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq/Homer	AACCGGAAGT	1e-13	-3.190e+01	0.0000	715.0	17.80%	6079.8	13.52%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-13	-3.175e+01	0.0000	82.0	2.04%	347.8	0.77%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-13	-3.073e+01	0.0000	1028.0	25.60%	9303.7	20.70%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-13	-3.072e+01	0.0000	174.0	4.33%	1052.6	2.34%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-13	-3.009e+01	0.0000	385.0	9.59%	2931.7	6.52%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq/Homer	YCWGGAATGY	1e-13	-3.000e+01	0.0000	296.0	7.37%	2117.3	4.71%
AP2gamma(AP2)/MCF7-TFAP2c-ChIP-Seq/Homer	HHTGSCCTSAGGSCA	1e-12	-2.851e+01	0.0000	604.0	15.04%	5079.4	11.30%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-12	-2.808e+01	0.0000	595.0	14.82%	5003.4	11.13%
Tlx?/NPC-H3K4me1-ChIP-Seq/Homer	CTGGCAGSCTGCCA	1e-11	-2.747e+01	0.0000	227.0	5.65%	1549.3	3.45%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-11	-2.686e+01	0.0000	415.0	10.33%	3289.1	7.32%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-11	-2.667e+01	0.0000	400.0	9.96%	3151.5	7.01%
Gata1(Zf)/K562-GATA1-ChIP-Seq/Homer	SAGATAAGRV	1e-11	-2.636e+01	0.0000	245.0	6.10%	1727.1	3.84%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq/Homer	ATGCCCTGAGGC	1e-11	-2.623e+01	0.0000	624.0	15.54%	5347.3	11.89%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq/Homer	AVCCGGAAGT	1e-11	-2.619e+01	0.0000	368.0	9.16%	2860.1	6.36%
Gata2(Zf)/K562-GATA2-ChIP-Seq/Homer	BBCTTATCTS	1e-11	-2.607e+01	0.0000	272.0	6.77%	1975.1	4.39%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq/Homer	ATGACGTCATCY	1e-10	-2.527e+01	0.0000	193.0	4.81%	1289.2	2.87%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq/Homer	ATATGCAAAT	1e-10	-2.453e+01	0.0000	146.0	3.64%	902.9	2.01%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-10	-2.449e+01	0.0000	346.0	8.62%	2693.9	5.99%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq/Homer	SCTGTCAMTCAN	1e-10	-2.434e+01	0.0000	134.0	3.34%	806.9	1.79%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq/Homer	ACAGGAAGTG	1e-10	-2.432e+01	0.0000	526.0	13.10%	4435.9	9.87%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-10	-2.308e+01	0.0000	192.0	4.78%	1316.1	2.93%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-9	-2.145e+01	0.0000	391.0	9.74%	3200.8	7.12%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-9	-2.115e+01	0.0000	237.0	5.90%	1755.8	3.91%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq/Homer	ATTTGCATAW	1e-7	-1.842e+01	0.0000	192.0	4.78%	1401.9	3.12%
EGR(Zf)/K562-EGR1-ChIP-Seq/Homer	TCCGCCCACGCA	1e-7	-1.820e+01	0.0000	200.0	4.98%	1478.4	3.29%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq/Homer	VACAGGAAAT	1e-7	-1.797e+01	0.0000	294.0	7.32%	2362.0	5.25%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-7	-1.680e+01	0.0000	739.0	18.40%	6873.3	15.29%
Hoxc9/Ainv15-Hoxc9-ChIP-Seq/Homer	GGCCATAAATCA	1e-6	-1.587e+01	0.0000	191.0	4.76%	1445.7	3.22%
ERG(ETS)/VCaP-ERG-ChIP-Seq/Homer	ACAGGAAGTG	1e-6	-1.565e+01	0.0000	708.0	17.63%	6604.1	14.69%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-6	-1.490e+01	0.0000	45.0	1.12%	215.1	0.48%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-6	-1.473e+01	0.0000	33.0	0.82%	134.9	0.30%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-6	-1.424e+01	0.0000	157.0	3.91%	1168.5	2.60%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq/Homer	MACAGGAAGT	1e-6	-1.414e+01	0.0000	133.0	3.31%	953.7	2.12%
Rfx1(HTH)/NPC-Rfx1-ChIP-Seq/Homer	KGTTGCCATGGCAA	1e-5	-1.368e+01	0.0000	102.0	2.54%	689.0	1.53%
ATF3(bZIP)/K562-ATF3-ChIP-Seq/Homer	SGGTCACGTGAC	1e-5	-1.365e+01	0.0000	111.0	2.76%	768.0	1.71%
RFX(HTH)/K562-RFX3-ChIP-Seq/Homer	CGGTTGCCATGGCAAC	1e-5	-1.343e+01	0.0000	62.0	1.54%	358.5	0.80%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq/Homer	SAAACCACAG	1e-5	-1.317e+01	0.0000	272.0	6.77%	2286.9	5.09%
Hoxb4/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-5	-1.317e+01	0.0000	79.0	1.97%	500.4	1.11%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-5	-1.305e+01	0.0000	432.0	10.76%	3884.9	8.64%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq/Homer	AAACCACARM	1e-5	-1.298e+01	0.0000	368.0	9.16%	3242.3	7.21%
Lhx3-like?(Homeobox)/Forebrain-p300-ChIP-Seq/Homer	CTAATTAGCH	1e-5	-1.245e+01	0.0000	371.0	9.24%	3292.4	7.32%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-5	-1.243e+01	0.0000	64.0	1.59%	386.4	0.86%
HOXA9/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-5	-1.220e+01	0.0000	237.0	5.90%	1975.9	4.40%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-4	-1.096e+01	0.0000	112.0	2.79%	826.6	1.84%
SCL/HPC7-Scl-ChIP-Seq/Homer	AVCAGCTG	1e-4	-1.082e+01	0.0001	1859.0	46.29%	19357.4	43.06%
E2F1(E2F)/Hela-E2F1-ChIP-Seq/Hoemr	CWGGCGGGAA	1e-4	-1.066e+01	0.0001	232.0	5.78%	1974.1	4.39%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-4	-1.063e+01	0.0001	585.0	14.57%	5572.1	12.40%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-4	-1.059e+01	0.0001	687.0	17.11%	6644.3	14.78%
Sox2(HMG)/mES-Sox2-ChIP-Seq/Homer	BCCATTGTTC	1e-4	-1.021e+01	0.0001	319.0	7.94%	2856.6	6.35%
p53(p53)/p53-ChIP-Chip/Homer	NRGACATGTCYRGACATGTC	1e-4	-1.010e+01	0.0001	7.0	0.17%	10.6	0.02%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-4	-1.003e+01	0.0001	224.0	5.58%	1916.3	4.26%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-4	-9.701e+00	0.0002	203.0	5.05%	1721.7	3.83%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-4	-9.672e+00	0.0002	45.0	1.12%	266.5	0.59%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-4	-9.642e+00	0.0002	695.0	17.31%	6785.7	15.09%
EBF1(EBF)/Near-E2A-ChIP-Seq/Homer	GTCCCCWGGGGA	1e-3	-9.134e+00	0.0003	542.0	13.50%	5204.5	11.58%
Znf263(Zf)/K562-Znf263-ChIP-Seq/Homer	CVGTSCTCCC	1e-3	-9.072e+00	0.0003	970.0	24.15%	9763.0	21.72%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq/Homer	ATTTCCTGTN	1e-3	-9.053e+00	0.0003	275.0	6.85%	2459.8	5.47%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-3	-8.913e+00	0.0003	620.0	15.44%	6037.3	13.43%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq/Homer	ACCRTGACTAATTNN	1e-3	-8.741e+00	0.0004	77.0	1.92%	554.5	1.23%
USF1(HLH)/GM12878-Usf1-ChIP-Seq/Homer	SGTCACGTGR	1e-3	-8.617e+00	0.0004	212.0	5.28%	1846.4	4.11%
Stat3(Stat)/mES-Stat3-ChIP-Seq/Homer	CTTCCGGGAA	1e-3	-8.577e+00	0.0004	206.0	5.13%	1788.6	3.98%
GATA:SCL/Ter119-SCL-ChIP-Seq/Homer	CRGCTGBNGNSNNSAGATAA	1e-3	-7.770e+00	0.0010	51.0	1.27%	342.3	0.76%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq/Homer	GCTGTGGTTW	1e-3	-7.661e+00	0.0011	261.0	6.50%	2375.9	5.29%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq/Homer	RCAGGATGTGGT	1e-3	-7.465e+00	0.0013	54.0	1.34%	373.3	0.83%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq/Homer	VAGGTCACNSTGACC	1e-3	-7.452e+00	0.0013	109.0	2.71%	879.5	1.96%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq/Homer	WGGGGATTTCCC	1e-3	-7.326e+00	0.0014	204.0	5.08%	1814.1	4.04%
ZBTB33/GM12878-ZBTB33-ChIP-Seq/Homer	GGVTCTCGCGAGAAC	1e-3	-7.140e+00	0.0017	43.0	1.07%	283.8	0.63%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq/Homer	NATTTCCNGGAAAT	1e-3	-7.033e+00	0.0019	101.0	2.51%	814.6	1.81%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq/Homer	SARTGGAAAAWRTGAGTCAB	1e-3	-6.986e+00	0.0020	66.0	1.64%	489.3	1.09%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-3	-6.968e+00	0.0020	444.0	11.06%	4303.4	9.57%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-2	-6.789e+00	0.0024	285.0	7.10%	2660.7	5.92%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq/Homer	ASWTCCTGBT	1e-2	-6.620e+00	0.0028	405.0	10.08%	3915.3	8.71%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq/Homer	GGTTGCCATGGCAA	1e-2	-6.531e+00	0.0030	49.0	1.22%	345.9	0.77%
STAT5(Stat)/mCD4+-Stat5a|b-ChIP-Seq/Homer	RTTTCTNAGAAA	1e-2	-6.052e+00	0.0048	112.0	2.79%	948.3	2.11%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-2	-6.025e+00	0.0049	305.0	7.59%	2906.3	6.47%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-2	-5.889e+00	0.0056	530.0	13.20%	5284.4	11.76%
STAT4(Stat)/CD4-Stat4-ChIP-Seq/Homer	NYTTCCWGGAAR	1e-2	-5.559e+00	0.0077	314.0	7.82%	3026.8	6.73%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-2	-5.544e+00	0.0077	529.0	13.17%	5299.4	11.79%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq/Homer	ACTGAAACCA	1e-2	-5.479e+00	0.0082	157.0	3.91%	1415.3	3.15%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-2	-5.434e+00	0.0085	159.0	3.96%	1437.6	3.20%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-2	-5.280e+00	0.0098	77.0	1.92%	633.0	1.41%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-2	-5.135e+00	0.0112	29.0	0.72%	193.1	0.43%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-2	-5.101e+00	0.0115	15.0	0.37%	79.2	0.18%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq/Homer	ATTTTCCATT	1e-2	-4.986e+00	0.0128	281.0	7.00%	2715.0	6.04%
Unknown/Homeobox/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-2	-4.746e+00	0.0162	215.0	5.35%	2042.8	4.54%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-2	-4.681e+00	0.0171	151.0	3.76%	1388.7	3.09%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-2	-4.673e+00	0.0171	695.0	17.31%	7158.8	15.92%
EBF(EBF)/proBcell-EBF-ChIP-Seq/Homer	DGTCCCYRGGGA	1e-1	-4.459e+00	0.0210	101.0	2.51%	893.9	1.99%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-4.457e+00	0.0210	104.0	2.59%	923.8	2.05%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-4.356e+00	0.0230	735.0	18.30%	7623.1	16.96%
HEB?/mES-Nanog-ChIP-Seq/Homer	CACAGCAGGGGG	1e-1	-4.195e+00	0.0267	267.0	6.65%	2617.1	5.82%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq/Homer	CTGCGCATGCGC	1e-1	-4.003e+00	0.0322	156.0	3.88%	1471.1	3.27%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-3.953e+00	0.0336	55.0	1.37%	457.2	1.02%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-1	-3.953e+00	0.0336	475.0	11.83%	4851.7	10.79%
Stat3+il23(Stat)/CD4-Stat3-ChIP-Seq/Homer	SVYTTCCNGGAARB	1e-1	-3.940e+00	0.0336	241.0	6.00%	2360.2	5.25%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e-1	-3.926e+00	0.0337	38.0	0.95%	297.0	0.66%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-3.808e+00	0.0377	392.0	9.76%	3973.6	8.84%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-3.736e+00	0.0402	154.0	3.83%	1464.4	3.26%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-3.735e+00	0.0402	299.0	7.45%	2987.8	6.65%
GRE(NR/IR3)/A549-GR-ChIP-Seq/Homer	NRGVACABNVTGTYCY	1e-1	-3.686e+00	0.0416	45.0	1.12%	368.8	0.82%
NFkB-p50,p52(RHD)/p50-ChIP-Chip/Homer	GGGGGAATCCCC	1e-1	-3.462e+00	0.0517	65.0	1.62%	570.6	1.27%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-ChIP-Seq/Homer	ATTTGCATAACAATG	1e-1	-3.427e+00	0.0531	52.0	1.29%	443.8	0.99%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-3.399e+00	0.0542	44.0	1.10%	367.0	0.82%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-3.099e+00	0.0727	54.0	1.34%	473.4	1.05%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-1	-2.978e+00	0.0815	306.0	7.62%	3122.5	6.95%
Pax8(Paired/Homeobox)/Rat-Pax8-ChIP-Seq/Homer	GTCATGCHTGRCTGS	1e-1	-2.922e+00	0.0856	158.0	3.93%	1552.8	3.45%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq/Homer	TAGGGCAAAGGTCA	1e-1	-2.900e+00	0.0869	438.0	10.91%	4553.3	10.13%
p53(p53)/mES-cMyc-ChIP-Seq/Homer	ACATGCCCGGGCAT	1e-1	-2.862e+00	0.0897	13.0	0.32%	88.4	0.20%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq/Homer	ARAGGTCANWGAGTTCANNN	1e-1	-2.781e+00	0.0965	76.0	1.89%	707.4	1.57%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq/Homer	GTCACGCTCSCTGM	1e-1	-2.635e+00	0.1110	51.0	1.27%	459.1	1.02%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq/Homer	GAGGTCAAAGGTCA	1e-1	-2.634e+00	0.1110	42.0	1.05%	369.9	0.82%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-2.602e+00	0.1132	9.0	0.22%	57.2	0.13%
STAT6/Macrophage-Stat6-ChIP-Seq/Homer	TTCCKNAGAA	1e-1	-2.534e+00	0.1203	159.0	3.96%	1588.4	3.53%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-1	-2.475e+00	0.1268	339.0	8.44%	3525.6	7.84%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.310e+00	0.1486	30.0	0.75%	260.6	0.58%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq/Homer	TGACCTTTGCCCCA	1e0	-2.295e+00	0.1499	339.0	8.44%	3544.6	7.88%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.180e+00	0.1670	36.0	0.90%	324.8	0.72%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-2.175e+00	0.1670	79.0	1.97%	767.9	1.71%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq/Homer	ASATCAAAGGVA	1e0	-2.143e+00	0.1712	128.0	3.19%	1286.5	2.86%
CArG(MADS)/PUER-Srf-ChIP-Seq/Homer	CCATATATGGNM	1e0	-2.091e+00	0.1790	86.0	2.14%	845.1	1.88%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq/Homer	GTRGGTCASTGGGTCA	1e0	-2.045e+00	0.1863	66.0	1.64%	639.0	1.42%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-2.039e+00	0.1863	274.0	6.82%	2866.7	6.38%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.951e+00	0.2022	1380.0	34.36%	15083.3	33.55%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.948e+00	0.2022	78.0	1.94%	769.1	1.71%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.931e+00	0.2037	506.0	12.60%	5414.5	12.04%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.923e+00	0.2042	112.0	2.79%	1131.1	2.52%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-1.884e+00	0.2109	22.0	0.55%	193.1	0.43%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq/Homer	ASWTCAAAGG	1e0	-1.818e+00	0.2241	68.0	1.69%	671.9	1.49%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq/Homer	VNRVCAGCTGGY	1e0	-1.794e+00	0.2281	415.0	10.33%	4435.7	9.87%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq/Homer	AGGTCANTGACCTB	1e0	-1.609e+00	0.2726	166.0	4.13%	1738.5	3.87%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq/Homer	GYMATAAAAH	1e0	-1.589e+00	0.2766	206.0	5.13%	2175.0	4.84%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.584e+00	0.2766	4.0	0.10%	26.9	0.06%
ETS:E-box/HPC7-Scl-ChIP-Seq/Homer	AGGAARCAGCTG	1e0	-1.499e+00	0.2992	30.0	0.75%	288.2	0.64%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq/Homer	RGGTCTCTAACY	1e0	-1.464e+00	0.3080	84.0	2.09%	865.0	1.92%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.402e+00	0.3259	44.0	1.10%	440.5	0.98%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq/Homer	VCCACGTG	1e0	-1.348e+00	0.3418	225.0	5.60%	2411.7	5.36%
p63(p53)/Keratinocyte-p63-ChIP-Seq/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.292e+00	0.3595	125.0	3.11%	1323.2	2.94%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq/Homer	RRCAGCTGYTSY	1e0	-1.261e+00	0.3686	346.0	8.62%	3756.6	8.36%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.260e+00	0.3686	449.0	11.18%	4895.6	10.89%
HRE(HSF)/HepG2-HSF1-ChIP-Seq/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.213e+00	0.3826	39.0	0.97%	397.4	0.88%
STAT6(Stat)/CD4-Stat6-ChIP-Seq/Homer	ABTTCYYRRGAA	1e0	-1.132e+00	0.4123	144.0	3.59%	1548.5	3.44%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-9.924e-01	0.4716	21.0	0.52%	215.4	0.48%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq/Homer	CARRGKBCAAAGTYCA	1e0	-9.659e-01	0.4816	138.0	3.44%	1502.5	3.34%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq/Homer	VCAGCTGYTG	1e0	-9.205e-01	0.5012	416.0	10.36%	4597.6	10.23%
Max(HLH)/K562-Max-ChIP-Seq/Homer	RCCACGTGGYYN	1e0	-9.110e-01	0.5032	230.0	5.73%	2531.0	5.63%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq/Homer	GYCATCMATCAT	1e0	-8.702e-01	0.5213	23.0	0.57%	243.2	0.54%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-8.536e-01	0.5272	157.0	3.91%	1728.6	3.85%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq/Homer	GGTTAAWCATTAA	1e0	-7.853e-01	0.5614	37.0	0.92%	403.4	0.90%
HIF2a(HLH)/O785-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-6.577e-01	0.6344	144.0	3.59%	1614.2	3.59%
GRE/RAW264.7-GRE-ChIP-Seq/Homer	VAGRACAKWCTGTYC	1e0	-6.247e-01	0.6522	62.0	1.54%	698.2	1.55%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-5.594e-01	0.6925	22.0	0.55%	252.1	0.56%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-5.516e-01	0.6943	157.0	3.91%	1780.2	3.96%
Esrrb(NR)/mES-Esrrb-ChIP-Seq/Homer	KTGACCTTGA	1e0	-5.198e-01	0.7129	211.0	5.25%	2397.0	5.33%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-4.978e-01	0.7250	6.0	0.15%	71.1	0.16%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-4.594e-01	0.7495	2.0	0.05%	24.3	0.05%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-3.274e-01	0.8509	222.0	5.53%	2577.3	5.73%
n-Myc(HLH)/mES-nMyc-ChIP-Seq/Homer	VRCCACGTGG	1e0	-2.376e-01	0.9260	246.0	6.13%	2888.6	6.43%
GLI3(Zf)/GLI3-ChIP-Chip/Homer	CGTGGGTGGTCC	1e0	-1.862e-01	0.9699	35.0	0.87%	454.2	1.01%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq/Homer	GCAGCCAAGCRTGACH	1e0	-1.650e-01	0.9856	155.0	3.86%	1875.2	4.17%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq/Homer	SGKCACGTGM	1e0	-1.504e-01	0.9951	58.0	1.44%	741.8	1.65%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.407e-01	0.9997	326.0	8.12%	3866.9	8.60%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-1.385e-01	0.9997	148.0	3.69%	1808.3	4.02%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq/Homer	BTCAAGGTCA	1e0	-9.533e-02	1.0000	153.0	3.81%	1896.5	4.22%
ZFX(Zf)/mES-Zfx-ChIP-Seq/Homer	AGGCCTRG	1e0	-7.559e-02	1.0000	597.0	14.87%	7051.6	15.69%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq/Homer	RTCACSCCAY	1e0	-6.748e-02	1.0000	76.0	1.89%	1001.2	2.23%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq/Homer	TACGTGCV	1e0	-4.649e-02	1.0000	97.0	2.42%	1276.5	2.84%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq/Homer	ACTYKNATTCGTGNTACTTC	1e0	-4.454e-02	1.0000	12.0	0.30%	207.9	0.46%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq/Homer	MAATCACTGC	1e0	-4.195e-02	1.0000	254.0	6.32%	3149.5	7.01%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq/Homer	AGGCCTAG	1e0	-3.769e-02	1.0000	984.0	24.50%	11561.8	25.72%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq/Homer	AGGTGTCA	1e0	-3.191e-02	1.0000	1272.0	31.67%	14852.4	33.04%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.297e-02	1.0000	15.0	0.37%	265.0	0.59%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-2.200e-02	1.0000	6.0	0.15%	133.8	0.30%
c-Myc/mES-cMyc-ChIP-Seq/Homer	VVCCACGTGG	1e0	-2.053e-02	1.0000	154.0	3.83%	2013.1	4.48%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.958e-02	1.0000	1141.0	28.41%	13435.8	29.89%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq/Homer	CGGTCACSCCAC	1e0	-1.534e-02	1.0000	55.0	1.37%	807.2	1.80%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.382e-02	1.0000	1471.0	36.63%	17219.4	38.30%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)	NTATYGATCH	1e0	-1.014e-02	1.0000	128.0	3.19%	1737.1	3.86%
Eomes(T-box)/H9-Eomes-ChIP-Seq/Homer	AGGTGTTAAN	1e0	-3.034e-03	1.0000	1068.0	26.59%	12823.4	28.53%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.424e-03	1.0000	662.0	16.48%	8213.5	18.27%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.225e-03	1.0000	1.0	0.02%	75.6	0.17%
E2A(HLH)/proBcell-E2A-ChIP-Seq/Homer	DNRCAGCTGY	1e0	-6.070e-04	1.0000	678.0	16.88%	8470.1	18.84%
Erra(NR)/HepG2-Erra-ChIP-Seq/Homer	CAAAGGTCAG	1e0	-5.800e-05	1.0000	792.0	19.72%	9981.1	22.20%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-0.000e+00	1.0000	802.0	19.97%	10418.6	23.18%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-0.000e+00	1.0000	156.0	3.88%	2535.7	5.64%
Nkx2.1(Homeobox)/H3122-NKX2.1-ChIP-Seq(GSE39998)/Homer	CCACTCAA	1e0	-0.000e+00	1.0000	737.0	18.35%	9895.3	22.01%
CRX(Homeobox)/Retina-Crx-ChIP-Seq/Homer	GCTAATCC	1e0	-0.000e+00	1.0000	793.0	19.75%	10579.0	23.53%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq/Homer	RRSCACTYAA	1e0	-0.000e+00	1.0000	718.0	17.88%	9825.2	21.86%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq/Homer	RGGTTACTANAGGTCA	1e0	-0.000e+00	1.0000	24.0	0.60%	822.9	1.83%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq/Homer/	CYAAAAATAG	1e0	0.000e+00	1.0000	103.0	2.56%	2596.6	5.78%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	100.0	2.49%	2787.9	6.20%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	54.1	0.12%