Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 346)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 48075)	% of Background Sequences with Motif
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-103	-2.383e+02	0.0000	180.0	52.02%	3701.8	7.70%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq/Homer	GATGASTCATCN	1e-72	-1.670e+02	0.0000	94.0	27.17%	1034.0	2.15%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-38	-8.779e+01	0.0000	58.0	16.76%	814.7	1.70%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-34	-7.945e+01	0.0000	146.0	42.20%	7036.7	14.64%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq/Homer	WAAGTAAACA	1e-33	-7.785e+01	0.0000	131.0	37.86%	5809.0	12.09%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-33	-7.679e+01	0.0000	118.0	34.10%	4793.6	9.98%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq/Homer	CYTGTTTACWYW	1e-28	-6.579e+01	0.0000	103.0	29.77%	4179.8	8.70%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq/Homer	GATGACTCAGCA	1e-21	-4.902e+01	0.0000	25.0	7.23%	218.9	0.46%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-18	-4.181e+01	0.0000	22.0	6.36%	206.5	0.43%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-17	-3.932e+01	0.0000	58.0	16.76%	2161.4	4.50%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-15	-3.647e+01	0.0000	37.0	10.69%	941.9	1.96%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-14	-3.403e+01	0.0000	19.0	5.49%	202.4	0.42%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-10	-2.353e+01	0.0000	113.0	32.66%	8705.1	18.12%
Gata1(Zf)/K562-GATA1-ChIP-Seq/Homer	SAGATAAGRV	1e-9	-2.258e+01	0.0000	55.0	15.90%	2969.9	6.18%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-9	-2.213e+01	0.0000	81.0	23.41%	5479.8	11.40%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq/Homer	CTGTTTAC	1e-9	-2.202e+01	0.0000	120.0	34.68%	9716.1	20.22%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-8	-1.976e+01	0.0000	56.0	16.18%	3306.8	6.88%
Gata2(Zf)/K562-GATA2-ChIP-Seq/Homer	BBCTTATCTS	1e-8	-1.974e+01	0.0000	57.0	16.47%	3400.2	7.08%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-7	-1.839e+01	0.0000	28.0	8.09%	1087.8	2.26%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	ATGATGCAAT	1e-7	-1.810e+01	0.0000	28.0	8.09%	1102.3	2.29%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCATCY	1e-7	-1.752e+01	0.0000	25.0	7.23%	922.3	1.92%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-7	-1.648e+01	0.0000	60.0	17.34%	4032.7	8.39%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-6	-1.559e+01	0.0000	15.0	4.34%	379.3	0.79%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq/Homer	YCATYAATCA	1e-5	-1.242e+01	0.0000	69.0	19.94%	5529.5	11.51%
Tlx?/NPC-H3K4me1-ChIP-Seq/Homer	CTGGCAGSCTGCCA	1e-4	-1.073e+01	0.0002	26.0	7.51%	1438.4	2.99%
NF1(CTF)/LNCAP-NF1-ChIP-Seq/Homer	CYTGGCABNSTGCCAR	1e-3	-8.763e+00	0.0014	23.0	6.65%	1351.4	2.81%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq/Homer	YTGCCAAG	1e-3	-8.618e+00	0.0015	82.0	23.70%	7761.0	16.15%
Hoxb4/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-3	-8.419e+00	0.0018	18.0	5.20%	946.5	1.97%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq/Homer	ATGCCCTGAGGC	1e-3	-8.159e+00	0.0023	36.0	10.40%	2683.3	5.58%
p53(p53)/mES-cMyc-ChIP-Seq/Homer	ACATGCCCGGGCAT	1e-3	-8.045e+00	0.0024	5.0	1.45%	80.4	0.17%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-3	-7.475e+00	0.0042	16.0	4.62%	853.9	1.78%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-3	-7.276e+00	0.0050	50.0	14.45%	4344.5	9.04%
AP2gamma(AP2)/MCF7-TFAP2c-ChIP-Seq/Homer	HHTGSCCTSAGGSCA	1e-2	-6.891e+00	0.0071	36.0	10.40%	2879.4	5.99%
p53(p53)/p53-ChIP-Chip/Homer	NRGACATGTCYRGACATGTC	1e-2	-6.122e+00	0.0148	3.0	0.87%	35.3	0.07%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-2	-5.985e+00	0.0165	17.0	4.91%	1081.9	2.25%
Klf4(Zf)/mES-Klf4-ChIP-Seq/Homer	GCCACACCCA	1e-2	-5.177e+00	0.0359	20.0	5.78%	1473.5	3.07%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-2	-4.773e+00	0.0523	8.0	2.31%	394.4	0.82%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq/Homer	ASWTCAAAGG	1e-1	-4.431e+00	0.0717	16.0	4.62%	1171.2	2.44%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq/Homer	NATTTCCNGGAAAT	1e-1	-4.314e+00	0.0786	15.0	4.34%	1086.8	2.26%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq/Homer	ATTTGCATAW	1e-1	-4.263e+00	0.0806	29.0	8.38%	2602.8	5.42%
Stat3+il23(Stat)/CD4-Stat3-ChIP-Seq/Homer	SVYTTCCNGGAARB	1e-1	-4.231e+00	0.0812	28.0	8.09%	2496.3	5.19%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-1	-4.112e+00	0.0893	80.0	23.12%	8854.9	18.43%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-1	-3.994e+00	0.0982	37.0	10.69%	3590.9	7.47%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-3.699e+00	0.1288	35.0	10.12%	3432.3	7.14%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-3.654e+00	0.1318	11.0	3.18%	772.9	1.61%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-1	-3.580e+00	0.1387	5.0	1.45%	233.5	0.49%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-3.552e+00	0.1397	39.0	11.27%	3951.3	8.22%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-3.514e+00	0.1420	115.0	33.24%	13682.8	28.47%
EBF1(EBF)/Near-E2A-ChIP-Seq/Homer	GTCCCCWGGGGA	1e-1	-3.466e+00	0.1461	34.0	9.83%	3377.2	7.03%
HIF2a(HLH)/O785-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-3.460e+00	0.1461	15.0	4.34%	1212.2	2.52%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq/Homer	VAGGTCACNSTGACC	1e-1	-3.408e+00	0.1486	13.0	3.76%	1009.1	2.10%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq/Homer	RACCGGAAGT	1e-1	-3.350e+00	0.1545	32.0	9.25%	3171.1	6.60%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-1	-3.344e+00	0.1545	31.0	8.96%	3054.6	6.36%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq/Homer	VACAGGAAAT	1e-1	-3.342e+00	0.1545	23.0	6.65%	2122.2	4.42%
EGR(Zf)/K562-EGR1-ChIP-Seq/Homer	TCCGCCCACGCA	1e-1	-3.295e+00	0.1545	7.0	2.02%	428.6	0.89%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq/Homer	ASATCAAAGGVA	1e-1	-3.293e+00	0.1545	24.0	6.94%	2248.9	4.68%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-1	-3.252e+00	0.1555	12.0	3.47%	928.2	1.93%
Sox2(HMG)/mES-Sox2-ChIP-Seq/Homer	BCCATTGTTC	1e-1	-3.226e+00	0.1569	39.0	11.27%	4051.8	8.43%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1	-3.167e+00	0.1635	48.0	13.87%	5180.9	10.78%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq/Homer	MACAGGAAGT	1e-1	-3.141e+00	0.1650	14.0	4.05%	1158.2	2.41%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq/Homer	YCWGGAATGY	1e-1	-3.109e+00	0.1677	30.0	8.67%	3000.4	6.24%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-1	-3.058e+00	0.1736	141.0	40.75%	17423.4	36.26%
GRE(NR/IR3)/A549-GR-ChIP-Seq/Homer	NRGVACABNVTGTYCY	1e-1	-3.054e+00	0.1736	7.0	2.02%	452.7	0.94%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-3.020e+00	0.1747	11.0	3.18%	858.5	1.79%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-1	-2.902e+00	0.1935	71.0	20.52%	8214.1	17.09%
ZBTB33/GM12878-ZBTB33-ChIP-Seq/Homer	GGVTCTCGCGAGAAC	1e-1	-2.872e+00	0.1964	2.0	0.58%	53.3	0.11%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq/Homer	AACCGGAAGT	1e-1	-2.867e+00	0.1964	47.0	13.58%	5167.5	10.75%
GRE/RAW264.7-GRE-ChIP-Seq/Homer	VAGRACAKWCTGTYC	1e-1	-2.831e+00	0.1985	11.0	3.18%	887.6	1.85%
STAT4(Stat)/CD4-Stat4-ChIP-Seq/Homer	NYTTCCWGGAAR	1e-1	-2.824e+00	0.1985	37.0	10.69%	3939.0	8.20%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq/Homer	SAAACCACAG	1e-1	-2.808e+00	0.1985	30.0	8.67%	3088.7	6.43%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq/Homer	RGCCATTAAC	1e-1	-2.790e+00	0.1985	171.0	49.42%	21695.0	45.15%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-1	-2.753e+00	0.2026	62.0	17.92%	7122.9	14.82%
STAT5(Stat)/mCD4+-Stat5a|b-ChIP-Seq/Homer	RTTTCTNAGAAA	1e-1	-2.728e+00	0.2049	14.0	4.05%	1233.7	2.57%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-2.728e+00	0.2049	69.0	19.94%	8038.3	16.73%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-1	-2.628e+00	0.2206	7.0	2.02%	500.7	1.04%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-2.600e+00	0.2239	54.0	15.61%	6165.3	12.83%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-2.576e+00	0.2263	30.0	8.67%	3162.0	6.58%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq/Homer	ACTGAAACCA	1e-1	-2.574e+00	0.2263	21.0	6.07%	2076.3	4.32%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-2.565e+00	0.2263	6.0	1.73%	408.5	0.85%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-2.564e+00	0.2263	16.0	4.62%	1494.5	3.11%
GATA:SCL/Ter119-SCL-ChIP-Seq/Homer	CRGCTGBNGNSNNSAGATAA	1e-1	-2.563e+00	0.2263	7.0	2.02%	508.6	1.06%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-2.530e+00	0.2263	25.0	7.23%	2567.0	5.34%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-2.504e+00	0.2263	8.0	2.31%	619.7	1.29%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq/Homer	TACGTGCV	1e-1	-2.484e+00	0.2275	10.0	2.89%	836.6	1.74%
Stat3(Stat)/mES-Stat3-ChIP-Seq/Homer	CTTCCGGGAA	1e-1	-2.304e+00	0.2691	16.0	4.62%	1555.0	3.24%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq/Homer	ATTTCCTGTN	1e0	-2.288e+00	0.2702	29.0	8.38%	3135.9	6.53%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq/Homer	RGGTCTCTAACY	1e0	-2.170e+00	0.3006	13.0	3.76%	1237.0	2.57%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-2.150e+00	0.3031	10.0	2.89%	896.3	1.87%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-2.148e+00	0.3031	52.0	15.03%	6120.6	12.74%
SCL/HPC7-Scl-ChIP-Seq/Homer	AVCAGCTG	1e0	-2.142e+00	0.3031	163.0	47.11%	21045.5	43.80%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-2.070e+00	0.3175	4.0	1.16%	265.9	0.55%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-2.047e+00	0.3214	30.0	8.67%	3349.2	6.97%
p63(p53)/Keratinocyte-p63-ChIP-Seq/Homer	NNDRCATGYCYNRRCATGYH	1e0	-2.030e+00	0.3234	14.0	4.05%	1387.9	2.89%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-2.019e+00	0.3236	15.0	4.34%	1509.6	3.14%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq/Homer	TAGGGCAAAGGTCA	1e0	-1.990e+00	0.3295	37.0	10.69%	4262.6	8.87%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.961e+00	0.3357	35.0	10.12%	4019.9	8.37%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.931e+00	0.3423	17.0	4.91%	1775.2	3.69%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq/Homer	ATGACGTCATCY	1e0	-1.871e+00	0.3597	17.0	4.91%	1793.7	3.73%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.767e+00	0.3950	56.0	16.18%	6851.8	14.26%
HEB?/mES-Nanog-ChIP-Seq/Homer	CACAGCAGGGGG	1e0	-1.742e+00	0.4011	20.0	5.78%	2207.5	4.59%
Pax8(Paired/Homeobox)/Rat-Pax8-ChIP-Seq/Homer	GTCATGCHTGRCTGS	1e0	-1.737e+00	0.4011	14.0	4.05%	1466.0	3.05%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq/Homer	GGTTAAWCATTAA	1e0	-1.737e+00	0.4011	7.0	2.02%	634.7	1.32%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.722e+00	0.4011	55.0	15.90%	6746.7	14.04%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.568e+00	0.4589	4.0	1.16%	325.3	0.68%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.547e+00	0.4642	4.0	1.16%	328.3	0.68%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq/Homer	TGACCTTTGCCCCA	1e0	-1.476e+00	0.4936	31.0	8.96%	3731.4	7.76%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.420e+00	0.5172	5.0	1.45%	462.6	0.96%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq/Homer	ASWTCCTGBT	1e0	-1.296e+00	0.5802	32.0	9.25%	3960.9	8.24%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq/Homer	AGGCCTAG	1e0	-1.286e+00	0.5809	55.0	15.90%	7038.2	14.65%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.249e+00	0.5968	24.0	6.94%	2930.6	6.10%
Hoxc9/Ainv15-Hoxc9-ChIP-Seq/Homer	GGCCATAAATCA	1e0	-1.238e+00	0.5981	22.0	6.36%	2673.9	5.56%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-1.235e+00	0.5981	19.0	5.49%	2282.4	4.75%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.231e+00	0.5981	4.0	1.16%	379.9	0.79%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.172e+00	0.6221	4.0	1.16%	390.5	0.81%
HOXA9/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.171e+00	0.6221	29.0	8.38%	3635.4	7.57%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq/Homer	ACAGGAAGTG	1e0	-1.147e+00	0.6270	31.0	8.96%	3916.3	8.15%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq/Homer	BTCAAGGTCA	1e0	-1.134e+00	0.6295	17.0	4.91%	2067.0	4.30%
Esrrb(NR)/mES-Esrrb-ChIP-Seq/Homer	KTGACCTTGA	1e0	-1.122e+00	0.6321	24.0	6.94%	2998.2	6.24%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq/Homer	GTCACGCTCSCTGM	1e0	-1.116e+00	0.6321	4.0	1.16%	401.4	0.84%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.115e+00	0.6321	47.0	13.58%	6089.3	12.67%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq/Homer	ATATGCAAAT	1e0	-1.113e+00	0.6321	14.0	4.05%	1682.3	3.50%
STAT6/Macrophage-Stat6-ChIP-Seq/Homer	TTCCKNAGAA	1e0	-1.061e+00	0.6500	17.0	4.91%	2102.0	4.37%
Znf263(Zf)/K562-Znf263-ChIP-Seq/Homer	CVGTSCTCCC	1e0	-1.011e+00	0.6777	56.0	16.18%	7398.1	15.40%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq/Homer	ACCRTGACTAATTNN	1e0	-9.893e-01	0.6867	8.0	2.31%	945.9	1.97%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-9.682e-01	0.6957	22.0	6.36%	2819.5	5.87%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-9.590e-01	0.6966	78.0	22.54%	10459.3	21.77%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq/Homer	RCAGGATGTGGT	1e0	-9.567e-01	0.6966	3.0	0.87%	309.8	0.64%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq/Homer	AGGTCANTGACCTB	1e0	-9.544e-01	0.6966	13.0	3.76%	1620.9	3.37%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-9.422e-01	0.6966	2.0	0.58%	187.4	0.39%
BORIS(Zf)/K562-CTCFL-ChIP-Seq/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-9.117e-01	0.7078	4.0	1.16%	447.1	0.93%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-8.954e-01	0.7140	67.0	19.36%	9016.6	18.76%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e0	-8.799e-01	0.7196	2.0	0.58%	197.1	0.41%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-8.764e-01	0.7196	4.0	1.16%	456.9	0.95%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq/Homer	RRCAGCTGYTSY	1e0	-8.598e-01	0.7233	22.0	6.36%	2887.9	6.01%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq/Homer	SCTGTCAMTCAN	1e0	-8.189e-01	0.7479	9.0	2.60%	1144.0	2.38%
ETS:E-box/HPC7-Scl-ChIP-Seq/Homer	AGGAARCAGCTG	1e0	-8.053e-01	0.7526	3.0	0.87%	342.9	0.71%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-7.810e-01	0.7655	29.0	8.38%	3903.0	8.12%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq/Homer	GTRGGTCASTGGGTCA	1e0	-7.700e-01	0.7684	5.0	1.45%	621.9	1.29%
ZFX(Zf)/mES-Zfx-ChIP-Seq/Homer	AGGCCTRG	1e0	-7.408e-01	0.7854	35.0	10.12%	4765.5	9.92%
Eomes(T-box)/H9-Eomes-ChIP-Seq/Homer	AGGTGTTAAN	1e0	-7.109e-01	0.8034	136.0	39.31%	18796.6	39.12%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-7.101e-01	0.8034	7.0	2.02%	918.8	1.91%
Rfx1(HTH)/NPC-Rfx1-ChIP-Seq/Homer	KGTTGCCATGGCAA	1e0	-6.961e-01	0.8040	5.0	1.45%	647.8	1.35%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-6.611e-01	0.8268	14.0	4.05%	1917.2	3.99%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-6.543e-01	0.8268	8.0	2.31%	1083.1	2.25%
USF1(HLH)/GM12878-Usf1-ChIP-Seq/Homer	SGTCACGTGR	1e0	-6.432e-01	0.8301	11.0	3.18%	1509.4	3.14%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-6.415e-01	0.8301	31.0	8.96%	4304.7	8.96%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq/Homer	NRAACCRGTTYRAACCRGYT	1e0	-5.646e-01	0.8857	3.0	0.87%	411.8	0.86%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq/Homer	AGGTGTCA	1e0	-5.441e-01	0.8980	128.0	36.99%	17968.0	37.39%
Lhx3-like?(Homeobox)/Forebrain-p300-ChIP-Seq/Homer	CTAATTAGCH	1e0	-5.384e-01	0.8980	37.0	10.69%	5257.9	10.94%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq/Homer	RTCACSCCAY	1e0	-5.364e-01	0.8980	9.0	2.60%	1291.2	2.69%
HRE(HSF)/HepG2-HSF1-ChIP-Seq/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-5.283e-01	0.8980	3.0	0.87%	424.4	0.88%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-5.262e-01	0.8980	22.0	6.36%	3152.5	6.56%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq/Homer	GCTGTGGTTW	1e0	-5.240e-01	0.8980	23.0	6.65%	3296.4	6.86%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq/Homer	WGGGGATTTCCC	1e0	-5.195e-01	0.8980	12.0	3.47%	1733.9	3.61%
ERG(ETS)/VCaP-ERG-ChIP-Seq/Homer	ACAGGAAGTG	1e0	-4.963e-01	0.8994	44.0	12.72%	6298.3	13.11%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq/Homer	AAACCACARM	1e0	-4.952e-01	0.8994	33.0	9.54%	4745.5	9.88%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-4.917e-01	0.8994	8.0	2.31%	1175.0	2.45%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-4.879e-01	0.8994	1.0	0.29%	132.6	0.28%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-4.775e-01	0.8994	5.0	1.45%	743.7	1.55%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-4.746e-01	0.8994	3.0	0.87%	445.1	0.93%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-ChIP-Seq/Homer	ATTTGCATAACAATG	1e0	-4.618e-01	0.8994	6.0	1.73%	900.9	1.87%
EBF(EBF)/proBcell-EBF-ChIP-Seq/Homer	DGTCCCYRGGGA	1e0	-4.551e-01	0.8994	4.0	1.16%	605.9	1.26%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-4.332e-01	0.9110	23.0	6.65%	3394.4	7.06%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-3.929e-01	0.9427	41.0	11.85%	6027.1	12.54%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-3.924e-01	0.9427	35.0	10.12%	5170.5	10.76%
STAT6(Stat)/CD4-Stat6-ChIP-Seq/Homer	ABTTCYYRRGAA	1e0	-3.842e-01	0.9427	14.0	4.05%	2142.4	4.46%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq/Homer	GYCATCMATCAT	1e0	-3.696e-01	0.9475	3.0	0.87%	494.5	1.03%
NRF1/Promoter/Homer	STGCGCATGCGC	1e0	-3.680e-01	0.9475	2.0	0.58%	333.3	0.69%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq/Homer	GGTTGCCATGGCAA	1e0	-3.657e-01	0.9475	2.0	0.58%	334.8	0.70%
ATF3(bZIP)/K562-ATF3-ChIP-Seq/Homer	SGGTCACGTGAC	1e0	-3.621e-01	0.9475	3.0	0.87%	498.5	1.04%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-3.563e-01	0.9475	17.0	4.91%	2614.3	5.44%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq/Homer	GCAGCCAAGCRTGACH	1e0	-3.422e-01	0.9475	10.0	2.89%	1590.6	3.31%
E2F1(E2F)/Hela-E2F1-ChIP-Seq/Hoemr	CWGGCGGGAA	1e0	-3.371e-01	0.9475	3.0	0.87%	512.8	1.07%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq/Homer	AVCCGGAAGT	1e0	-3.371e-01	0.9475	9.0	2.60%	1444.5	3.01%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq/Homer	VNRVCAGCTGGY	1e0	-3.354e-01	0.9475	30.0	8.67%	4539.9	9.45%
GLI3(Zf)/GLI3-ChIP-Chip/Homer	CGTGGGTGGTCC	1e0	-3.233e-01	0.9475	2.0	0.58%	354.2	0.74%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq/Homer	CGGTCACSCCAC	1e0	-3.083e-01	0.9505	6.0	1.73%	1009.9	2.10%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.976e-01	0.9554	4.0	1.16%	700.8	1.46%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq/Homer	VCAGCTGYTG	1e0	-2.913e-01	0.9560	24.0	6.94%	3735.1	7.77%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq/Homer	CTGCGCATGCGC	1e0	-2.763e-01	0.9651	1.0	0.29%	197.6	0.41%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq/Homer	SGKCACGTGM	1e0	-2.761e-01	0.9651	3.0	0.87%	551.3	1.15%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-2.717e-01	0.9651	1.0	0.29%	199.0	0.41%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq/Homer	GAGGTCAAAGGTCA	1e0	-2.707e-01	0.9651	2.0	0.58%	383.4	0.80%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq/Homer	MAATCACTGC	1e0	-2.642e-01	0.9651	30.0	8.67%	4665.1	9.71%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-2.461e-01	0.9678	1.0	0.29%	211.5	0.44%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-2.442e-01	0.9678	7.0	2.02%	1230.7	2.56%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-2.401e-01	0.9678	1.0	0.29%	214.3	0.45%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq/Homer	ATTTTCCATT	1e0	-2.133e-01	0.9841	25.0	7.23%	4030.1	8.39%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq/Homer	GYMATAAAAH	1e0	-1.766e-01	1.0000	24.0	6.94%	3966.0	8.25%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.661e-01	1.0000	1.0	0.29%	260.6	0.54%
Unknown/Homeobox/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.553e-01	1.0000	20.0	5.78%	3410.8	7.10%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.475e-01	1.0000	6.0	1.73%	1198.5	2.49%
NFkB-p50,p52(RHD)/p50-ChIP-Chip/Homer	GGGGGAATCCCC	1e0	-1.274e-01	1.0000	1.0	0.29%	294.0	0.61%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq/Homer	VCCACGTG	1e0	-1.269e-01	1.0000	6.0	1.73%	1236.0	2.57%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.069e-01	1.0000	4.0	1.16%	920.0	1.91%
CArG(MADS)/PUER-Srf-ChIP-Seq/Homer	CCATATATGGNM	1e0	-1.028e-01	1.0000	6.0	1.73%	1286.9	2.68%
Max(HLH)/K562-Max-ChIP-Seq/Homer	RCCACGTGGYYN	1e0	-1.020e-01	1.0000	14.0	4.05%	2621.1	5.45%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-8.742e-02	1.0000	47.0	13.58%	7755.5	16.14%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq/Homer	ARAGGTCANWGAGTTCANNN	1e0	-8.448e-02	1.0000	3.0	0.87%	777.0	1.62%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-7.827e-02	1.0000	85.0	24.57%	13389.4	27.86%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-7.699e-02	1.0000	7.0	2.02%	1532.0	3.19%
n-Myc(HLH)/mES-nMyc-ChIP-Seq/Homer	VRCCACGTGG	1e0	-7.053e-02	1.0000	12.0	3.47%	2409.6	5.01%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)	NTATYGATCH	1e0	-5.974e-02	1.0000	15.0	4.34%	2957.7	6.15%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-5.942e-02	1.0000	85.0	24.57%	13550.2	28.20%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-5.275e-02	1.0000	161.0	46.53%	24398.2	50.77%
Erra(NR)/HepG2-Erra-ChIP-Seq/Homer	CAAAGGTCAG	1e0	-4.276e-02	1.0000	63.0	18.21%	10499.5	21.85%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-3.814e-02	1.0000	33.0	9.54%	5995.0	12.48%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq/Homer	CARRGKBCAAAGTYCA	1e0	-3.633e-02	1.0000	8.0	2.31%	1895.6	3.94%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq/Homer	RRSCACTYAA	1e0	-3.538e-02	1.0000	79.0	22.83%	12957.0	26.96%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq/Homer	RGGTTACTANAGGTCA	1e0	-3.097e-02	1.0000	3.0	0.87%	960.0	2.00%
c-Myc/mES-cMyc-ChIP-Seq/Homer	VVCCACGTGG	1e0	-2.502e-02	1.0000	7.0	2.02%	1798.2	3.74%
CRX(Homeobox)/Retina-Crx-ChIP-Seq/Homer	GCTAATCC	1e0	-6.453e-03	1.0000	89.0	25.72%	15233.6	31.70%
Nkx2.1(Homeobox)/H3122-NKX2.1-ChIP-Seq(GSE39998)/Homer	CCACTCAA	1e0	-3.795e-03	1.0000	64.0	18.50%	11701.4	24.35%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-3.028e-03	1.0000	1.0	0.29%	799.9	1.66%
E2A(HLH)/proBcell-E2A-ChIP-Seq/Homer	DNRCAGCTGY	1e0	-9.510e-04	1.0000	35.0	10.12%	7564.7	15.74%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-7.760e-04	1.0000	4.0	1.16%	1831.8	3.81%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq/Homer/	CYAAAAATAG	1e0	-3.190e-04	1.0000	10.0	2.89%	3320.6	6.91%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-3.070e-04	1.0000	12.0	3.47%	3733.6	7.77%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	38.2	0.08%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq/Homer	ACTYKNATTCGTGNTACTTC	1e0	0.000e+00	1.0000	0.0	0.00%	279.3	0.58%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	80.0	0.17%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	40.6	0.08%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	23.4	0.05%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	101.7	0.21%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	101.3	0.21%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	131.2	0.27%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	20.2	0.04%
RFX(HTH)/K562-RFX3-ChIP-Seq/Homer	CGGTTGCCATGGCAAC	1e0	0.000e+00	1.0000	0.0	0.00%	174.9	0.36%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	40.4	0.08%