Information for motif1


Reverse Opposite:

p-value:1e-29
log p-value:-6.808e+01
Information Content per bp:1.971
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets408.8 +/- 85.4bp
Average Position of motif in Background1639.8 +/- 1467.1bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GATCCGATGCTA-----
--NCCGTTGCTANGNGN

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GATCCGATGCTA-----
--NNCGTTGCTATGGNN

PB0054.1_Rfx3_1/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GATCCGATGCTA---------
NTNNNNNGTTGCTANGGNNCANA

MA0035.1_Gata1/Jaspar

Match Rank:4
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GATCCGATGCTA
----GGATGG--

MA0091.1_TAL1::TCF3/Jaspar

Match Rank:5
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GATCCGATGCTA-
-AACAGATGGTCN

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:6
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GATCCGATGCTA-
---ATGATGCAAT

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:GATCCGATGCTA---
---CTGTTGCTAGGS

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:8
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GATCCGATGCTA-
-RGATGATGCAAT

GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:9
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-GATCCGATGCTA--
AGATGKDGAGATAAG

PB0115.1_Ehf_2/Jaspar

Match Rank:10
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----GATCCGATGCTA
TAGTATTTCCGATCTT-