Information for motif12


Reverse Opposite:

p-value:1e-17
log p-value:-4.129e+01
Information Content per bp:1.969
Number of Target Sequences with motif869.0
Percentage of Target Sequences with motif58.96%
Number of Background Sequences with motif23117.2
Percentage of Background Sequences with motif47.56%
Average Position of motif in Targets3038.1 +/- 1671.7bp
Average Position of motif in Background2999.4 +/- 1755.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.56
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0164.1_Nr2e3/Jaspar

Match Rank:1
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:TTAAAGCT--
---AAGCTTG

MA0151.1_ARID3A/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TTAAAGCT
ATTAAA---

PH0158.1_Rhox11_2/Jaspar

Match Rank:3
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----TTAAAGCT----
TCNCTTTACAGCGNNNT

Unknown/Homeobox/Limb-p300-ChIP-Seq/Homer

Match Rank:4
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----TTAAAGCT
NGCAATTAAA---

Tcf3(HMG)/mES-Tcf3-ChIP-Seq/Homer

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TTAAAGCT
ACATCAAAGG-

PH0157.1_Rhox11_1/Jaspar

Match Rank:6
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TTAAAGCT----
TCNNTTTACAGCGNNNT

TATA-Box(TBP)/Promoter/Homer

Match Rank:7
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TTAAAGCT
GNCTATAAAAGG-

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:TTAAAGCT-
----NGCTN

PB0184.1_Tbp_2/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TTAAAGCT---
CCGATTTAAGCGACC

CHR/Cell-Cycle-Exp/Homer

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TTAAAGCT-
TTTGAAACCG