Information for motif13


Reverse Opposite:

p-value:1e-17
log p-value:-4.073e+01
Information Content per bp:1.833
Number of Target Sequences with motif645.0
Percentage of Target Sequences with motif43.76%
Number of Background Sequences with motif15976.2
Percentage of Background Sequences with motif32.87%
Average Position of motif in Targets2992.6 +/- 1721.7bp
Average Position of motif in Background3009.2 +/- 1750.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.48
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR/Cell-Cycle-Exp/Homer

Match Rank:1
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GTTTAAAAAC-
-TTTGAAACCG

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GTTTAAAAAC-----
GTATAAAAGGCGGGG

MA0108.1_TBP/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GTTTAAAAAC-----
GTATAAAAGGCGGGG

MA0108.2_TBP/Jaspar

Match Rank:4
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GTTTAAAAAC-----
GTATAAAAGGCGGGG

TATA-Box(TBP)/Promoter/Homer

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GTTTAAAAAC
GNCTATAAAAGG

PB0187.1_Tcf7_2/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GTTTAAAAAC--
CCGTATTATAAACAA

MA0151.1_ARID3A/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GTTTAAAAAC
-ATTAAA---

Unknown/Homeobox/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GTTTAAAAAC-
-TTTAATTGCN

MA0157.1_FOXO3/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GTTTAAAAAC
TGTTTACA---

PH0137.1_Pitx1/Jaspar

Match Rank:10
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------GTTTAAAAAC
TTAGAGGGATTAACAAT