Information for motif18


Reverse Opposite:

p-value:1e-13
log p-value:-3.119e+01
Information Content per bp:1.507
Number of Target Sequences with motif480.0
Percentage of Target Sequences with motif32.56%
Number of Background Sequences with motif11611.6
Percentage of Background Sequences with motif23.89%
Average Position of motif in Targets2995.4 +/- 1700.9bp
Average Position of motif in Background2991.0 +/- 1744.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0442.1_SOX10/Jaspar

Match Rank:1
Score:0.73
Offset:4
Orientation:reverse strand
Alignment:KHATABARAGNY
----ACAAAG--

PB0166.1_Sox12_2/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--KHATABARAGNY--
AAACAGACAAAGGAAT

Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:3
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----KHATABARAGNY
ATTTGCATACAATGG-

PB0137.1_Irf3_2/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:KHATABARAGNY----
--GGAGAAAGGTGCGA

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:KHATABARAGNY
---RACAAWGG-

PB0168.1_Sox14_2/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-KHATABARAGNY--
CTCACACAATGGCGC

POL012.1_TATA-Box/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:KHATABARAGNY---
GTATAAAAGGCGGGG

MA0108.1_TBP/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:KHATABARAGNY---
GTATAAAAGGCGGGG

MA0108.2_TBP/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:KHATABARAGNY---
GTATAAAAGGCGGGG

PB0071.1_Sox4_1/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--KHATABARAGNY---
AGAAGAACAAAGGACTA