Information for motif19


Reverse Opposite:

p-value:1e-13
log p-value:-3.070e+01
Information Content per bp:1.530
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif14.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets1780.3 +/- 1872.9bp
Average Position of motif in Background2528.0 +/- 1608.6bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0034.1_Irf4_1/Jaspar

Match Rank:1
Score:0.73
Offset:-5
Orientation:reverse strand
Alignment:-----TTTCGTTACG
TNTGGTTTCGATACN

T1ISRE(IRF)/Ifnb-Exp/Homer

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TTTCGTTACG
ACTTTCGTTTCT

PB0035.1_Irf5_1/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TTTCGTTACG-
NTGGTTTCGGTTNNN

PB0036.1_Irf6_1/Jaspar

Match Rank:4
Score:0.64
Offset:-7
Orientation:reverse strand
Alignment:-------TTTCGTTACG
NNNTTGGTTTCGNTNNN

PB0037.1_Isgf3g_1/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TTTCGTTACG-
TNAGTTTCGATTTTN

PB0033.1_Irf3_1/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TTTCGTTACG-
CAGTTTCGNTTCTN

PB0159.1_Rfx4_2/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TTTCGTTACG--
TACCCTAGTTACCGA

MA0043.1_HLF/Jaspar

Match Rank:8
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TTTCGTTACG-----
---GGTTACGCAATA

IRF4(IRF)/GM12878-IRF4-ChIP-Seq/Homer

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TTTCGTTACG
TGGTTTCAGT---

PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq/Homer

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TTTCGTTACG--
NNAATTAGTCACGGT