Information for motif21


Reverse Opposite:

p-value:1e-11
log p-value:-2.719e+01
Information Content per bp:1.498
Number of Target Sequences with motif690.0
Percentage of Target Sequences with motif46.81%
Number of Background Sequences with motif18403.3
Percentage of Background Sequences with motif37.86%
Average Position of motif in Targets3142.8 +/- 1707.1bp
Average Position of motif in Background3027.0 +/- 1751.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.64
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0187.1_Tcf7_2/Jaspar

Match Rank:1
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--GTATTYTAAA---
CCGTATTATAAACAA

PB0174.1_Sox30_2/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GTATTYTAAA----
NCGTATTATAATCNTA

PB0106.1_Arid5a_2/Jaspar

Match Rank:3
Score:0.64
Offset:-7
Orientation:reverse strand
Alignment:-------GTATTYTAAA
TNNTTTCGTATTNNANN

PB0129.1_Glis2_2/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GTATTYTAAA---
AATATTAATAAAGA

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:5
Score:0.61
Offset:-7
Orientation:forward strand
Alignment:-------GTATTYTAAA
ACTCCAAGTACTTGGAA

MA0032.1_FOXC1/Jaspar

Match Rank:6
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----GTATTYTAAA
GGTAAGTA-------

PB0079.1_Sry_1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GTATTYTAAA----
NANTATTATAATTNNN

PH0116.1_Nkx2-9/Jaspar

Match Rank:8
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------GTATTYTAAA
NATTTAAGTACTTNAAA

PH0117.1_Nkx3-1/Jaspar

Match Rank:9
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------GTATTYTAAA-
TACTAAGTACTTAAATG

CHR/Cell-Cycle-Exp/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GTATTYTAAA
CGGTTTCAAA-