Information for motif24


Reverse Opposite:

p-value:1e-10
log p-value:-2.426e+01
Information Content per bp:1.652
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif1.22%
Number of Background Sequences with motif73.7
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets1848.3 +/- 1116.8bp
Average Position of motif in Background3303.2 +/- 1801.7bp
Strand Bias (log2 ratio + to - strand density)1.5
Multiplicity (# of sites on avg that occur together)2.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0133.1_Hic1_2/Jaspar

Match Rank:1
Score:0.71
Offset:-6
Orientation:reverse strand
Alignment:------GGGCACGCATBA
NNNNTTGGGCACNNCN--

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:2
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GGGCACGCATBA
---CACGCA---

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GGGCACGCATBA
--GCACGTNC--

PB0180.1_Sp4_2/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GGGCACGCATBA-
NNGGCCACGCCTTTN

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GGGCACGCATBA
-BGCACGTA---

MA0160.1_NR4A2/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GGGCACGCATBA
AAGGTCAC------

PB0147.1_Max_2/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGGCACGCATBA-
GTGCCACGCGACTG

HIF2a(HLH)/O785-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GGGCACGCATBA
--GCACGTACCC

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GGGCACGCATBA
TBGCACGCAA--

MA0014.1_Pax5/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GGGCACGCATBA-------
CCGCTACGCTTCAGTGCNCN