Information for motif28


Reverse Opposite:

p-value:1e-7
log p-value:-1.642e+01
Information Content per bp:1.965
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif2.04%
Number of Background Sequences with motif313.8
Percentage of Background Sequences with motif0.65%
Average Position of motif in Targets3189.6 +/- 929.4bp
Average Position of motif in Background3035.6 +/- 1755.2bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.47
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0104.2_Mycn/Jaspar

Match Rank:1
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:GATGCCACGT---
---GCCACGTGCN

MA0147.1_Myc/Jaspar

Match Rank:2
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:GATGCCACGT---
---GCCACGTGCG

c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq/Homer

Match Rank:3
Score:0.71
Offset:3
Orientation:forward strand
Alignment:GATGCCACGT-
---NCCACGTG

n-Myc(HLH)/mES-nMyc-ChIP-Seq/Homer

Match Rank:4
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:GATGCCACGT----
----CCACGTGGNN

MA0093.1_USF1/Jaspar

Match Rank:5
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:GATGCCACGT-
----CCACGTG

MA0059.1_MYC::MAX/Jaspar

Match Rank:6
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:GATGCCACGT----
---ACCACGTGCTC

MA0004.1_Arnt/Jaspar

Match Rank:7
Score:0.68
Offset:5
Orientation:reverse strand
Alignment:GATGCCACGT-
-----CACGTG

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:8
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:GATGCCACGT--
----GCACGTNC

c-Myc/mES-cMyc-ChIP-Seq/Homer

Match Rank:9
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:GATGCCACGT----
----CCACGTGGNN

Max(HLH)/K562-Max-ChIP-Seq/Homer

Match Rank:10
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GATGCCACGT-----
---ACCACGTGGTNN