Information for motif3


Reverse Opposite:

p-value:1e-25
log p-value:-5.963e+01
Information Content per bp:1.966
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif2.37%
Number of Background Sequences with motif91.3
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets2785.5 +/- 1294.4bp
Average Position of motif in Background2806.3 +/- 1743.9bp
Strand Bias (log2 ratio + to - strand density)-1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0119.1_Foxa2_2/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GATGTATGTTAT----
-NCNTTTGTTATTTNN

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq/Homer

Match Rank:2
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GATGTATGTTAT
ATGATKGATGRC--

PB0170.1_Sox17_2/Jaspar

Match Rank:3
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GATGTATGTTAT-
NTTNTATGAATGTGNNC

PB0122.1_Foxk1_2/Jaspar

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GATGTATGTTAT------
---NNNTGTTGTTGTTNG

MA0033.1_FOXL1/Jaspar

Match Rank:5
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GATGTATGTTAT
----TATGTNTA

PH0134.1_Pbx1/Jaspar

Match Rank:6
Score:0.56
Offset:-8
Orientation:reverse strand
Alignment:--------GATGTATGTTAT
NNNNNATTGATGNGTGN---

PB0121.1_Foxj3_2/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GATGTATGTTAT------
-NNCTTTGTTTTGNTNNN

PH0046.1_Hoxa10/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GATGTATGTTAT------
--TNAATTTTATTACCTN

PB0178.1_Sox8_2/Jaspar

Match Rank:9
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----GATGTATGTTAT
NNTNTCATGAATGT---

PH0075.1_Hoxd10/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GATGTATGTTAT------
-NTNAATTTTATTGNATT