Information for motif32


Reverse Opposite:

p-value:1e-5
log p-value:-1.328e+01
Information Content per bp:1.939
Number of Target Sequences with motif745.0
Percentage of Target Sequences with motif50.54%
Number of Background Sequences with motif21620.1
Percentage of Background Sequences with motif44.48%
Average Position of motif in Targets3025.0 +/- 1719.6bp
Average Position of motif in Background2991.5 +/- 1753.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.42
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0154.1_Osr1_2/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GCTAGTAGGTAG-----
-NNNTTAGGTAGCNTNT

PB0155.1_Osr2_2/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GCTAGTAGGTAG-----
-NNTGTAGGTAGCANNT

PB0161.1_Rxra_2/Jaspar

Match Rank:3
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCTAGTAGGTAG----
TCGCGAAGGTTGTACT

MA0032.1_FOXC1/Jaspar

Match Rank:4
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GCTAGTAGGTAG
---GGTAAGTA-

PB0149.1_Myb_2/Jaspar

Match Rank:5
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----GCTAGTAGGTAG
NNNTGGCAGTTGGTNN

PB0150.1_Mybl1_2/Jaspar

Match Rank:6
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---GCTAGTAGGTAG
CACGGCAGTTGGTNN

PH0107.1_Msx2/Jaspar

Match Rank:7
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---GCTAGTAGGTAG--
ANCGCTAATTGGTCTNN

PH0005.1_Barhl1/Jaspar

Match Rank:8
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--GCTAGTAGGTAG--
GNNTTAATTGGTTGTT

MA0124.1_NKX3-1/Jaspar

Match Rank:9
Score:0.49
Offset:5
Orientation:reverse strand
Alignment:GCTAGTAGGTAG
-----TAAGTAT

PH0097.1_Lhx6_2/Jaspar

Match Rank:10
Score:0.49
Offset:-4
Orientation:reverse strand
Alignment:----GCTAGTAGGTAG-
NNNCGCTAATTAGNNGA