Information for motif37


Reverse Opposite:

p-value:1e-2
log p-value:-5.092e+00
Information Content per bp:1.983
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif88.2
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets1885.2 +/- 677.4bp
Average Position of motif in Background2772.4 +/- 1579.4bp
Strand Bias (log2 ratio + to - strand density)3.9
Multiplicity (# of sites on avg that occur together)4.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GAAGAAGAGGGT
NGAAGC-------

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GAAGAAGAGGGT
AGAGGAAGTG---

MA0039.1_Klf4/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GAAGAAGAGGGT
-TAAAGGAAGG-

ETS:RUNX/Jurkat-RUNX1-ChIP-Seq/Homer

Match Rank:4
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GAAGAAGAGGGT
ACAGGATGTGGT-

PB0124.1_Gabpa_2/Jaspar

Match Rank:5
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----GAAGAAGAGGGT
NNNNGGGGGAAGANGG-

PB0024.1_Gcm1_1/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GAAGAAGAGGGT----
NNNNATGCGGGTNNNN

Sox2(HMG)/mES-Sox2-ChIP-Seq/Homer

Match Rank:7
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:GAAGAAGAGGGT
GAACAATGGN--

MA0080.2_SPI1/Jaspar

Match Rank:8
Score:0.50
Offset:1
Orientation:forward strand
Alignment:GAAGAAGAGGGT
-AGGAAGT----

MA0080.1_SPI1/Jaspar

Match Rank:9
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--GAAGAAGAGGGT
CGGAAG--------

PB0065.1_Sox15_1/Jaspar

Match Rank:10
Score:0.49
Offset:-4
Orientation:forward strand
Alignment:----GAAGAAGAGGGT-
TAGTGAACAATAGATTT