Information for motif39


Reverse Opposite:

p-value:1e-1
log p-value:-3.471e+00
Information Content per bp:1.950
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.14%
Number of Background Sequences with motif9.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets4529.0 +/- 0.0bp
Average Position of motif in Background2985.7 +/- 1854.2bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GGTGTGTGTTCG-
NNGCGTGTGTGCNGCN

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGTGTGTGTTCG
NNTGTGGATTSS

POL007.1_BREd/Jaspar

Match Rank:3
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GGTGTGTGTTCG
---GTTTGTT--

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:4
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GGTGTGTGTTCG
NTGGGTGTGGCC---

GLI3(Zf)/GLI3-ChIP-Chip/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GGTGTGTGTTCG
CGTGGGTGGTCC

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GGTGTGTGTTCG
CAGGTAAGTAT---

PB0208.1_Zscan4_2/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---GGTGTGTGTTCG-
NNNNTTGTGTGCTTNN

MA0042.1_FOXI1/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GGTGTGTGTTCG
GGATGTTTGTTT-

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GGTGTGTGTTCG-
-NNHTGTGGTTWN

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GGTGTGTGTTCG
--TGCGTG----