Information for motif4


Reverse Opposite:

p-value:1e-23
log p-value:-5.435e+01
Information Content per bp:1.811
Number of Target Sequences with motif432.0
Percentage of Target Sequences with motif29.31%
Number of Background Sequences with motif8954.5
Percentage of Background Sequences with motif18.42%
Average Position of motif in Targets3030.7 +/- 1785.4bp
Average Position of motif in Background2999.3 +/- 1751.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0115.1_Nkx2-6/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:AAACTTAAGT------
AATNTTAAGTGGNTNN

PH0114.1_Nkx2-5/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AAACTTAAGT------
AAATTCAAGTGGNTTN

T1ISRE(IRF)/Ifnb-Exp/Homer

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--AAACTTAAGT
AGAAACGAAAGT

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AAACTTAAGT-------
NTNNTTAAGTGGNTNAN

MA0124.1_NKX3-1/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AAACTTAAGT
ATACTTA---

PH0113.1_Nkx2-4/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AAACTTAAGT------
AATTTCAAGTGGCTTN

PH0171.1_Nkx2-1/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AAACTTAAGT------
AANTTCAAGTGGCTTN

MA0063.1_Nkx2-5/Jaspar

Match Rank:8
Score:0.62
Offset:4
Orientation:forward strand
Alignment:AAACTTAAGT-
----TTAATTG

PH0004.1_Nkx3-2/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AAACTTAAGT-------
NTNNTTAAGTGGTTANN

MA0122.1_Nkx3-2/Jaspar

Match Rank:10
Score:0.62
Offset:4
Orientation:forward strand
Alignment:AAACTTAAGT---
----TTAAGTGGA