Information for motif40


Reverse Opposite:

p-value:1e-1
log p-value:-2.954e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.14%
Number of Background Sequences with motif12.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets577.6 +/- 334.6bp
Average Position of motif in Background3013.5 +/- 1681.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)30.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GATTCATAACTC-
ACATTCATGACACG

HOXA9/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GATTCATAACTC
TGATTTATGGCC-

Hoxb4/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GATTCATAACTC
TGATTRATGGCY-

PB0142.1_Jundm2_2/Jaspar

Match Rank:4
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GATTCATAACTC
NNGGTGACTCATCANN-

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq/Homer

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GATTCATAACTC
TGATTGATGA---

Hoxc9/Ainv15-Hoxc9-ChIP-Seq/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GATTCATAACTC
TGATTTATGGCC-

GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:7
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GATTCATAACTC
NNAGATNVNWATCTN

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq/Homer

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GATTCATAACTC
ATGATKGATGRC--

Jun-AP1(bZIP)/K562-cJun-ChIP-Seq/Homer

Match Rank:9
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GATTCATAACTC
NNATGAGTCATN----

AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GATTCATAACTC
GATGAGTCAT-----