Information for motif5


Reverse Opposite:

p-value:1e-22
log p-value:-5.270e+01
Information Content per bp:1.596
Number of Target Sequences with motif487.0
Percentage of Target Sequences with motif33.04%
Number of Background Sequences with motif10578.4
Percentage of Background Sequences with motif21.76%
Average Position of motif in Targets3047.9 +/- 1741.6bp
Average Position of motif in Background3031.4 +/- 1729.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.28
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0027.1_En1/Jaspar

Match Rank:1
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CGACTACAAC--
-GANCACTACTT

GFY(?)/Promoter/Homer

Match Rank:2
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CGACTACAAC----
--ACTACAATTCCC

MA0032.1_FOXC1/Jaspar

Match Rank:3
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CGACTACAAC--
----TACTNNNN

GFY-Staf/Promoters/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CGACTACAAC-----------
-AACTACAATTCCCAGAATGC

PB0122.1_Foxk1_2/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CGACTACAAC----
CAAACAACAACACCT

PB0090.1_Zbtb12_1/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CGACTACAAC-----
NNGATCTAGAACCTNNN

MA0133.1_BRCA1/Jaspar

Match Rank:7
Score:0.55
Offset:5
Orientation:forward strand
Alignment:CGACTACAAC--
-----ACAACAC

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CGACTACAAC-
NWAACCACADNN

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CGACTACAAC
AAACCACAGC

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CGACTACAAC
AAACCACANN