Information for motif8


Reverse Opposite:

p-value:1e-21
log p-value:-4.852e+01
Information Content per bp:1.788
Number of Target Sequences with motif431.0
Percentage of Target Sequences with motif29.24%
Number of Background Sequences with motif9199.2
Percentage of Background Sequences with motif18.93%
Average Position of motif in Targets3158.7 +/- 1585.9bp
Average Position of motif in Background2981.9 +/- 1754.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq/Homer

Match Rank:1
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:GTTTTATYAC
NTTTTATGAC

PH0012.1_Cdx1/Jaspar

Match Rank:2
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--GTTTTATYAC----
NAATTTTATTACCTNN

PH0013.1_Cdx2/Jaspar

Match Rank:3
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--GTTTTATYAC----
NAATTTTATTACCNNN

PH0046.1_Hoxa10/Jaspar

Match Rank:4
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---GTTTTATYAC---
TNAATTTTATTACCTN

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GTTTTATYAC-
-TTTTATTRGN

PH0065.1_Hoxc10/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GTTTTATYAC----
ANNTTTTACGACNTNN

PH0047.1_Hoxa11/Jaspar

Match Rank:7
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GTTTTATYAC----
NNGTTTTACGACTTTA

PH0075.1_Hoxd10/Jaspar

Match Rank:8
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----GTTTTATYAC---
NTNAATTTTATTGNATT

PH0073.1_Hoxc9/Jaspar

Match Rank:9
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GTTTTATYAC----
NNAATTAATGACCNNN

PH0064.1_Hoxb9/Jaspar

Match Rank:10
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GTTTTATYAC---
NGANTTTTATGGCTCN