Information for motif9


Reverse Opposite:

p-value:1e-20
log p-value:-4.810e+01
Information Content per bp:1.787
Number of Target Sequences with motif523.0
Percentage of Target Sequences with motif35.48%
Number of Background Sequences with motif11857.9
Percentage of Background Sequences with motif24.40%
Average Position of motif in Targets3093.6 +/- 1695.3bp
Average Position of motif in Background3019.9 +/- 1757.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.28
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0099.1_Zfp691_1/Jaspar

Match Rank:1
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--ARCAGTGCCA-----
CGAACAGTGCTCACTAT

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----ARCAGTGCCA--
NNNANTGCAGTGCNNTT

MA0161.1_NFIC/Jaspar

Match Rank:3
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:ARCAGTGCCA-
-----TGCCAA

PB0146.1_Mafk_2/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---ARCAGTGCCA--
GAAAAAATTGCAAGG

PB0195.1_Zbtb3_2/Jaspar

Match Rank:5
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----ARCAGTGCCA-
NNNNTGCCAGTGATTG

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:ARCAGTGCCA
TTAAGTGCTT

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq/Homer

Match Rank:7
Score:0.58
Offset:4
Orientation:forward strand
Alignment:ARCAGTGCCA--
----TTGCCAAG

PB0133.1_Hic1_2/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:ARCAGTGCCA------
GGGTGTGCCCAAAAGG

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:ARCAGTGCCA
TTGAGTGSTT

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:ARCAGTGCCA
CACAGN----