Information for motif1


Reverse Opposite:

p-value:1e-21
log p-value:-5.012e+01
Information Content per bp:1.593
Number of Target Sequences with motif120.0
Percentage of Target Sequences with motif10.01%
Number of Background Sequences with motif1767.1
Percentage of Background Sequences with motif3.66%
Average Position of motif in Targets3216.2 +/- 1619.9bp
Average Position of motif in Background3027.2 +/- 1725.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0036.1_Irf6_1/Jaspar

Match Rank:1
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CCGTATAGWT---
NNNTTGGTTTCGNTNNN

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)

Match Rank:2
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CCGTATAGWT--
--NTATYGATCH

PB0198.1_Zfp128_2/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCGTATAGWT-----
-TGTATATATATACC

PB0035.1_Irf5_1/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CCGTATAGWT----
NTGGTTTCGGTTNNN

PB0163.1_Six6_2/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CCGTATAGWT-----
ANNNGGATATATCCNNN

PB0024.1_Gcm1_1/Jaspar

Match Rank:6
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------CCGTATAGWT
TCGTACCCGCATCATT

PB0106.1_Arid5a_2/Jaspar

Match Rank:7
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----CCGTATAGWT--
TNNTTTCGTATTNNANN

PB0034.1_Irf4_1/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CCGTATAGWT---
TNTGGTTTCGATACN

MA0032.1_FOXC1/Jaspar

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CCGTATAGWT
GGTAAGTA-----

PB0161.1_Rxra_2/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CCGTATAGWT------
TCGCGAAGGTTGTACT