Information for motif15


Reverse Opposite:

p-value:1e-9
log p-value:-2.143e+01
Information Content per bp:1.885
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif2.34%
Number of Background Sequences with motif268.9
Percentage of Background Sequences with motif0.56%
Average Position of motif in Targets2916.4 +/- 1427.8bp
Average Position of motif in Background3076.7 +/- 1594.5bp
Strand Bias (log2 ratio + to - strand density)3.9
Multiplicity (# of sites on avg that occur together)2.79
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---GTAATGAATGTG
NNTNTCATGAATGT-

PB0170.1_Sox17_2/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GTAATGAATGTG---
NTTNTATGAATGTGNNC

PH0072.1_Hoxc8/Jaspar

Match Rank:3
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GTAATGAATGTG
TTGGGGTAATTAACGT-

PH0062.1_Hoxb7/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GTAATGAATGTG-
GTAGTAATTAATGCAA

PH0071.1_Hoxc6/Jaspar

Match Rank:5
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----GTAATGAATGTG
NNTNATTAATTAATTTG

PH0118.1_Nkx6-1_1/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GTAATGAATGTG-
CNNAGTAATTAATTNNC

PB0028.1_Hbp1_1/Jaspar

Match Rank:7
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GTAATGAATGTG
ACTATGAATGAATGAT

PH0069.1_Hoxc4/Jaspar

Match Rank:8
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GTAATGAATGTG
NNTNNTTAATTAATNCG

T1ISRE(IRF)/Ifnb-Exp/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GTAATGAATGTG
AGAAACGAAAGT-

PH0023.1_Dlx4/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GTAATGAATGTG-
GTCGGTAATTATNGNGN