Information for motif19


Reverse Opposite:

p-value:1e-8
log p-value:-1.908e+01
Information Content per bp:1.826
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif29.4
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets3201.8 +/- 1273.5bp
Average Position of motif in Background2598.3 +/- 1702.5bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GYCACCTGTCKG
NNCACCTGNN--

PB0047.1_Myf6_1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GYCACCTGTCKG--
CNGACACCTGTTCNNN

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.64
Offset:5
Orientation:forward strand
Alignment:GYCACCTGTCKG-
-----CTGTCTGG

PB0147.1_Max_2/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GYCACCTGTCKG
GTGCCACGCGACTG

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GYCACCTGTCKG
GCCATCTGTT--

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GYCACCTGTCKG-
---VBSYGTCTGG

ATF3(bZIP)/K562-ATF3-ChIP-Seq/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GYCACCTGTCKG
GTCACGTGACCN

MA0103.1_ZEB1/Jaspar

Match Rank:8
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GYCACCTGTCKG
--CACCTG----

Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GYCACCTGTCKG
GTCACGTGGT--

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GYCACCTGTCKG-
NNTNCGCACCTGTNGAN