Information for motif2


Reverse Opposite:

p-value:1e-19
log p-value:-4.483e+01
Information Content per bp:1.717
Number of Target Sequences with motif377.0
Percentage of Target Sequences with motif31.44%
Number of Background Sequences with motif9769.9
Percentage of Background Sequences with motif20.21%
Average Position of motif in Targets2948.9 +/- 1745.8bp
Average Position of motif in Background3020.1 +/- 1757.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0032.1_FOXC1/Jaspar

Match Rank:1
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:CAAGTACR----
----TACTNNNN

HIF2a(HLH)/O785-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CAAGTACR-
GCACGTACCC

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CAAGTACR------
TTCNAAGTACTTNNNNN

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CAAGTACR-
CCAGGAACAG

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:5
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CAAGTACR----
ATCCACAGGTGCGAAAA

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CAAGTACR
GCACGTNC-

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CAAGTACR
BGCACGTA--

MA0124.1_NKX3-1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CAAGTACR
TAAGTAT-

PB0094.1_Zfp128_1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CAAGTACR-------
TTNGGGTACGCCNNANN

PH0117.1_Nkx3-1/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CAAGTACR-----
NATTTAAGTACTTANNA