Information for motif20


Reverse Opposite:

p-value:1e-8
log p-value:-1.844e+01
Information Content per bp:1.530
Number of Target Sequences with motif49.0
Percentage of Target Sequences with motif4.09%
Number of Background Sequences with motif785.3
Percentage of Background Sequences with motif1.62%
Average Position of motif in Targets3345.7 +/- 1360.3bp
Average Position of motif in Background3051.8 +/- 1729.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0077.1_Hoxd12/Jaspar

Match Rank:1
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----TTATACGA-----
NNNATTTTACGACNNTN

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---TTATACGA-----
ANATTTTACGAGNNNN

PH0076.1_Hoxd11/Jaspar

Match Rank:3
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----TTATACGA-----
ANNATTTTACGACNTNA

PH0067.1_Hoxc12/Jaspar

Match Rank:4
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----TTATACGA-----
GNNNTTTTACGACCTNA

PH0066.1_Hoxc11/Jaspar

Match Rank:5
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TTATACGA-----
NNNTTTTACGACNTTN

PH0047.1_Hoxa11/Jaspar

Match Rank:6
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TTATACGA-----
NNGTTTTACGACTTTA

PH0068.1_Hoxc13/Jaspar

Match Rank:7
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TTATACGA-----
NAATTTTACGAGNTNN

PH0065.1_Hoxc10/Jaspar

Match Rank:8
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---TTATACGA-----
ANNTTTTACGACNTNN

PB0106.1_Arid5a_2/Jaspar

Match Rank:9
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----TTATACGA-----
CATACAATACGAAATAA

MA0108.2_TBP/Jaspar

Match Rank:10
Score:0.67
Offset:-9
Orientation:reverse strand
Alignment:---------TTATACGA
NNNNNNCTTTTATAN--