Information for motif21


Reverse Opposite:

p-value:1e-7
log p-value:-1.744e+01
Information Content per bp:1.530
Number of Target Sequences with motif79.0
Percentage of Target Sequences with motif6.59%
Number of Background Sequences with motif1629.1
Percentage of Background Sequences with motif3.37%
Average Position of motif in Targets2639.5 +/- 1621.4bp
Average Position of motif in Background2995.6 +/- 1745.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0035.1_Irf5_1/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AGATTCGG-----
NTGGTTTCGGTTNNN

MA0038.1_Gfi/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---AGATTCGG
CNGTGATTTN-

PB0034.1_Irf4_1/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---AGATTCGG----
TNTGGTTTCGATACN

PB0036.1_Irf6_1/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----AGATTCGG----
NNNTTGGTTTCGNTNNN

PB0024.1_Gcm1_1/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AGATTCGG------
NNNNATGCGGGTNNNN

PB0037.1_Isgf3g_1/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGATTCGG-----
TNAGTTTCGATTTTN

MA0035.1_Gata1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGATTCGG
GGATGG--

PB0077.1_Spdef_1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGATTCGG------
GTACATCCGGATTTTT

CRX(Homeobox)/Retina-Crx-ChIP-Seq/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGATTCGG
GGATTAGC

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGATTCGG--
ACATCCTGNT