Information for motif28


Reverse Opposite:

p-value:1e-6
log p-value:-1.412e+01
Information Content per bp:1.976
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif12.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets3317.4 +/- 624.8bp
Average Position of motif in Background2158.1 +/- 1551.4bp
Strand Bias (log2 ratio + to - strand density)4.1
Multiplicity (# of sites on avg that occur together)9.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0138.1_Irf4_2/Jaspar

Match Rank:1
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----TCTCGGGTGGTT
AGTATTCTCGGTTGC--

PH0111.1_Nkx2-2/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TCTCGGGTGGTT--
NANTTTCAAGTGGTTAN

PB0140.1_Irf6_2/Jaspar

Match Rank:3
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----TCTCGGGTGGTT
ACCACTCTCGGTCAC--

PB0167.1_Sox13_2/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TCTCGGGTGGTT----
GTATTGGGTGGGTAATT

GLI3(Zf)/GLI3-ChIP-Chip/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TCTCGGGTGGTT-
-CGTGGGTGGTCC

GFX(?)/Promoter/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TCTCGGGTGGTT
TCTCGCGAGAAT

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TCTCGGGTGGTT-----
NNANTGGTGGTCTTNNN

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq/Homer

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TCTCGGGTGGTT-
---NNTGTGGTTT

MA0130.1_ZNF354C/Jaspar

Match Rank:9
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:TCTCGGGTGGTT
------GTGGAT

PH0113.1_Nkx2-4/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TCTCGGGTGGTT--
AATTTCAAGTGGCTTN