Information for motif29


Reverse Opposite:

p-value:1e-6
log p-value:-1.407e+01
Information Content per bp:1.895
Number of Target Sequences with motif195.0
Percentage of Target Sequences with motif16.26%
Number of Background Sequences with motif5590.0
Percentage of Background Sequences with motif11.56%
Average Position of motif in Targets2993.3 +/- 1767.8bp
Average Position of motif in Background2959.3 +/- 1730.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:1
Score:0.63
Offset:-8
Orientation:forward strand
Alignment:--------CTTAAGAT-
CTTAACCACTTAAGGAT

PH0115.1_Nkx2-6/Jaspar

Match Rank:2
Score:0.62
Offset:-7
Orientation:forward strand
Alignment:-------CTTAAGAT-
TAAGCCACTTAACATT

PH0004.1_Nkx3-2/Jaspar

Match Rank:3
Score:0.61
Offset:-8
Orientation:forward strand
Alignment:--------CTTAAGAT-
CATAACCACTTAACAAC

MA0063.1_Nkx2-5/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CTTAAGAT
-TTAATTG

PH0111.1_Nkx2-2/Jaspar

Match Rank:5
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------CTTAAGAT--
ATAACCACTTGAAAATT

PH0113.1_Nkx2-4/Jaspar

Match Rank:6
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------CTTAAGAT-
TAAGCCACTTGAAATT

PH0088.1_Isl2/Jaspar

Match Rank:7
Score:0.57
Offset:-8
Orientation:forward strand
Alignment:--------CTTAAGAT
CAAAATCAATTAATTT

PH0114.1_Nkx2-5/Jaspar

Match Rank:8
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------CTTAAGAT-
TAAGCCACTTGAATTT

MA0124.1_NKX3-1/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CTTAAGAT
ATACTTA----

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq/Homer

Match Rank:10
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CTTAAGAT
AASCACTCAA---