Information for motif38


Reverse Opposite:

p-value:1e-3
log p-value:-8.105e+00
Information Content per bp:1.891
Number of Target Sequences with motif477.0
Percentage of Target Sequences with motif39.78%
Number of Background Sequences with motif16909.5
Percentage of Background Sequences with motif34.98%
Average Position of motif in Targets3157.3 +/- 1815.2bp
Average Position of motif in Background2999.6 +/- 1722.3bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.62
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0129.1_Glis2_2/Jaspar

Match Rank:1
Score:0.80
Offset:-4
Orientation:forward strand
Alignment:----TTAATAAA--
AATATTAATAAAGA

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq/Homer

Match Rank:2
Score:0.75
Offset:0
Orientation:forward strand
Alignment:TTAATAAA--
GTCATAAAAN

PB0001.1_Arid3a_1/Jaspar

Match Rank:3
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATAAA----
NNNTTTTAATTAANNNN

PH0075.1_Hoxd10/Jaspar

Match Rank:4
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---TTAATAAA------
AATGCAATAAAATTTAT

PH0078.1_Hoxd13/Jaspar

Match Rank:5
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---TTAATAAA-----
CTACCAATAAAATTCT

PH0153.1_Prop1/Jaspar

Match Rank:6
Score:0.74
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATAAA----
GNNTNTTAATTAATNCN

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-TTAATAAA-
NCYAATAAAA

PH0128.1_Otp/Jaspar

Match Rank:8
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----TTAATAAA-----
CNNATTAATTAATTNNN

PH0046.1_Hoxa10/Jaspar

Match Rank:9
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---TTAATAAA-----
TAGGTAATAAAATTCA

PH0011.1_Alx1_2/Jaspar

Match Rank:10
Score:0.73
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATAAA----
NNNAATTAATTAANGNG