Information for motif39


Reverse Opposite:

p-value:1e-2
log p-value:-6.204e+00
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.33%
Number of Background Sequences with motif21.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets694.7 +/- 436.2bp
Average Position of motif in Background2451.5 +/- 1781.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)9.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GTACATGGAGAC-----
CTACTTGGATACGGAAT

PH0084.1_Irx3_2/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GTACATGGAGAC-
NNTATTACATGTANNNT

PH0083.1_Irx3_1/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GTACATGGAGAC-
ANTATTACATGTANNNN

PH0087.1_Irx6/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GTACATGGAGAC--
AAAATACATGTAAAAAT

PH0082.1_Irx2/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GTACATGGAGAC--
TAAATACATGTAAAATT

PB0158.1_Rfx3_2/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GTACATGGAGAC-------
ACTGACCCTTGGTTACCACAAAG

PH0086.1_Irx5/Jaspar

Match Rank:7
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GTACATGGAGAC-
ANTNNTACATGTANNTN

PH0085.1_Irx4/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GTACATGGAGAC-
NNTTTTACATGTANNNT

MA0112.1_ESR1/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GTACATGGAGAC----
GGGGTCACGGTGACCTGG

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:10
Score:0.54
Offset:-7
Orientation:forward strand
Alignment:-------GTACATGGAGAC
ACTCCAAGTACTTGGAA--