Information for motif4


Reverse Opposite:

p-value:1e-18
log p-value:-4.198e+01
Information Content per bp:1.817
Number of Target Sequences with motif458.0
Percentage of Target Sequences with motif38.20%
Number of Background Sequences with motif12805.8
Percentage of Background Sequences with motif26.49%
Average Position of motif in Targets3067.4 +/- 1791.1bp
Average Position of motif in Background3004.8 +/- 1736.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.47
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR/Cell-Cycle-Exp/Homer

Match Rank:1
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GCATTTTAAA---
---TTTGAAACCG

TATA-Box(TBP)/Promoter/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCATTTTAAA---
-CCTTTTATAGNC

MA0142.1_Pou5f1/Jaspar

Match Rank:3
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GCATTTTAAA-
ATTTGCATAACAAAG

Unknown/Homeobox/Limb-p300-ChIP-Seq/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCATTTTAAA
NGCAATTAAA

PB0187.1_Tcf7_2/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GCATTTTAAA---
CCGTATTATAAACAA

Tcf3(HMG)/mES-Tcf3-ChIP-Seq/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GCATTTTAAA--
--ACATCAAAGG

POL012.1_TATA-Box/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GCATTTTAAA-
NNNNNNCTTTTATAN

MA0108.1_TBP/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GCATTTTAAA-
NNNNNNCTTTTATAN

MA0108.2_TBP/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GCATTTTAAA-
NNNNNNCTTTTATAN

MA0151.1_ARID3A/Jaspar

Match Rank:10
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GCATTTTAAA
----ATTAAA