Information for motif40


Reverse Opposite:

p-value:1e-2
log p-value:-6.076e+00
Information Content per bp:1.942
Number of Target Sequences with motif55.0
Percentage of Target Sequences with motif4.59%
Number of Background Sequences with motif1475.2
Percentage of Background Sequences with motif3.05%
Average Position of motif in Targets2739.0 +/- 1143.8bp
Average Position of motif in Background3094.8 +/- 1806.4bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)2.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0003.1_TFAP2A/Jaspar

Match Rank:1
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:AGCCCGGGGC
-CCCNNNGGC

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:2
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--AGCCCGGGGC---
ATTGCCTGAGGCAAT

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--AGCCCGGGGC---
ATTGCCTCAGGCAAT

PB0087.1_Tcfap2c_1/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--AGCCCGGGGC---
ATTGCCTGAGGCGAA

MA0146.1_Zfx/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-AGCCCGGGGC---
CAGGCCNNGGCCNN

PB0085.1_Tcfap2a_1/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AGCCCGGGGC---
ATTCCCTGAGGGGAA

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AGCCCGGGGC---
-GCCTCAGGGCAT

AP2gamma(AP2)/MCF7-TFAP2c-ChIP-Seq/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AGCCCGGGGC----
TGCCCTGAGGGCANN

MA0104.2_Mycn/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGCCCGGGGC
CGCACGTGGC

MA0147.1_Myc/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGCCCGGGGC
CGCACGTGGC