Information for motif41


Reverse Opposite:

p-value:1e-2
log p-value:-4.697e+00
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.25%
Number of Background Sequences with motif17.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets2768.6 +/- 471.3bp
Average Position of motif in Background2095.9 +/- 1192.2bp
Strand Bias (log2 ratio + to - strand density)-4.0
Multiplicity (# of sites on avg that occur together)11.33
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0015.1_Crx/Jaspar

Match Rank:1
Score:0.70
Offset:-6
Orientation:forward strand
Alignment:------GGATTATCCCAT
CGTTGGGGATTAGCCT--

CRX(Homeobox)/Retina-Crx-ChIP-Seq/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GGATTATCCCAT
GGATTAGC----

PH0126.1_Obox6/Jaspar

Match Rank:3
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------GGATTATCCCAT
AAAAACGGATTATTG---

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GGATTATCCCAT
NGGGATTA------

PB0185.1_Tcf1_2/Jaspar

Match Rank:5
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------GGATTATCCCAT
TTGCCCGGATTAGG----

PH0025.1_Dmbx1/Jaspar

Match Rank:6
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------GGATTATCCCAT
TGAACCGGATTAATGAA-

PH0035.1_Gsc/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----GGATTATCCCAT
NNAAGGGATTAACGANT

PH0123.1_Obox3/Jaspar

Match Rank:8
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------GGATTATCCCAT
TGAGGGGGATTAACTAT-

PH0139.1_Pitx3/Jaspar

Match Rank:9
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GGATTATCCCAT
AGGGGGATTAGCTGCC

PH0121.1_Obox1/Jaspar

Match Rank:10
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------GGATTATCCCAT
TTAAGGGGATTAACTAC-