Information for motif42


Reverse Opposite:

p-value:1e0
log p-value:-2.118e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.17%
Number of Background Sequences with motif24.4
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets2214.7 +/- 422.3bp
Average Position of motif in Background2869.1 +/- 1611.1bp
Strand Bias (log2 ratio + to - strand density)4.6
Multiplicity (# of sites on avg that occur together)13.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0038.1_Gfi/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TCTGATTTGACC
CNGTGATTTN---

PH0037.1_Hdx/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TCTGATTTGACC--
TNNNATGATTTCNNCNN

PB0030.1_Hnf4a_1/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TCTGATTTGACC-------
--NNANTTGACCCCTNNNN

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.62
Offset:7
Orientation:reverse strand
Alignment:TCTGATTTGACC-
-------TGACCT

PH0014.1_Cphx/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TCTGATTTGACC--
NTTGATTNNATCAN

PB0057.1_Rxra_1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TCTGATTTGACC-------
--TGTCGTGACCCCTTAAT

MA0071.1_RORA_1/Jaspar

Match Rank:7
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:TCTGATTTGACC-----
-------TGACCTTGAT

MA0060.1_NFYA/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TCTGATTTGACC--
NCNCTGATTGGCTGNN

PB0118.1_Esrra_2/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TCTGATTTGACC-------
--NNNNTTGACCCCTNNNN

PB0157.1_Rara_2/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TCTGATTTGACC-------
---NNCNTGACCCCGCTCT