Information for motif44


Reverse Opposite:

p-value:1e-2
log p-value:-5.382e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.17%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets5610.0 +/- 286.6bp
Average Position of motif in Background4855.7 +/- 798.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)8.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0044.1_Homez/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GTCAAACACGAT-----
NNTAAAAACGATGTTNT

PB0141.1_Isgf3g_2/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GTCAAACACGAT--
GCAAAACATTACTA

PB0106.1_Arid5a_2/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GTCAAACACGAT----
CATACAATACGAAATAA

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq/Homer

Match Rank:4
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GTCAAACACGAT
NCTGTCAATCAN---

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:5
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GTCAAACACGAT
GAAGATCAATCACTAA

PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq/Homer

Match Rank:6
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GTCAAACACGAT--
GTCACGCTCNCTGA

PB0144.1_Lef1_2/Jaspar

Match Rank:7
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GTCAAACACGAT
GAAGATCAATCACTTA

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----GTCAAACACGAT
GSCTGTCACTCA----

MA0153.1_HNF1B/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GTCAAACACGAT
GTTAAATATTAA

PB0130.1_Gm397_2/Jaspar

Match Rank:10
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GTCAAACACGAT-
AGCGGCACACACGCAA