Information for motif5


Reverse Opposite:

p-value:1e-17
log p-value:-3.961e+01
Information Content per bp:1.759
Number of Target Sequences with motif312.0
Percentage of Target Sequences with motif26.02%
Number of Background Sequences with motif7861.9
Percentage of Background Sequences with motif16.26%
Average Position of motif in Targets3137.8 +/- 1668.3bp
Average Position of motif in Background3006.7 +/- 1745.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.28
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0164.1_Nr2e3/Jaspar

Match Rank:1
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AAAGGYTYTT
-AAGCTTG--

PH0044.1_Homez/Jaspar

Match Rank:2
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----AAAGGYTYTT--
NNTAAAAACGATGTTNT

PB0141.1_Isgf3g_2/Jaspar

Match Rank:3
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---AAAGGYTYTT-
GCAAAACATTACTA

PB0135.1_Hoxa3_2/Jaspar

Match Rank:4
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----AAAGGYTYTT
CCTTAATNGNTTTT

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:AAAGGYTYTT--
-AAGGATATNTN

Tcf3(HMG)/mES-Tcf3-ChIP-Seq/Homer

Match Rank:6
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----AAAGGYTYTT
ACATCAAAGG-----

PB0046.1_Mybl1_1/Jaspar

Match Rank:7
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----AAAGGYTYTT--
NNANTAACGGTTNNNAN

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:8
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----AAAGGYTYTT
ANGNAAAGGTCA--

HRE(HSF)/HepG2-HSF1-ChIP-Seq/Homer

Match Rank:9
Score:0.51
Offset:-7
Orientation:forward strand
Alignment:-------AAAGGYTYTT---
NNTTCTGGAANNTTCTAGAA

PB0045.1_Myb_1/Jaspar

Match Rank:10
Score:0.50
Offset:-5
Orientation:reverse strand
Alignment:-----AAAGGYTYTT--
NNNNTAACGGTTNNNAN