Information for motif8


Reverse Opposite:

p-value:1e-13
log p-value:-3.100e+01
Information Content per bp:1.966
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif1.75%
Number of Background Sequences with motif89.9
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets2181.2 +/- 1695.3bp
Average Position of motif in Background3225.4 +/- 1641.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TAACTGATTTAC
TAATTGATTA--

MA0038.1_Gfi/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TAACTGATTTAC
-CNGTGATTTN-

Hoxc9/Ainv15-Hoxc9-ChIP-Seq/Homer

Match Rank:3
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:TAACTGATTTAC----
----TGATTTATGGCC

PH0006.1_Barhl2/Jaspar

Match Rank:4
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TAACTGATTTAC
NNNTTAATTGGTTTTT

HOXA9/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:5
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:TAACTGATTTAC----
----TGATTTATGGCC

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TAACTGATTTAC-
TTAATGTTTAACC

PH0088.1_Isl2/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TAACTGATTTAC
AAATTAATTGATTTNG

BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TAACTGATTTAC
NHAACBGYYV---

PH0154.1_Prrx1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TAACTGATTTAC----
GTAACTAATTAACTACT

MA0153.1_HNF1B/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TAACTGATTTAC
TTAATATTTAAC