Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1199)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 48346)	% of Background Sequences with Motif
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq/Homer	NRAACCRGTTYRAACCRGYT	1e-6	-1.554e+01	0.0000	395.0	32.94%	12705.4	26.28%
Stat3(Stat)/mES-Stat3-ChIP-Seq/Homer	CTTCCGGGAA	1e-5	-1.377e+01	0.0001	904.0	75.40%	33431.3	69.15%
STAT6/Macrophage-Stat6-ChIP-Seq/Homer	TTCCKNAGAA	1e-4	-1.068e+01	0.0018	899.0	74.98%	33656.1	69.62%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq/Homer	AYAGTGCCMYCTRGTGGCCA	1e-4	-1.010e+01	0.0024	334.0	27.86%	11086.9	22.93%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-4	-9.908e+00	0.0024	1103.0	91.99%	42799.9	88.53%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-4	-9.884e+00	0.0024	862.0	71.89%	32212.9	66.63%
STAT5(Stat)/mCD4+-Stat5a|b-ChIP-Seq/Homer	RTTTCTNAGAAA	1e-4	-9.797e+00	0.0024	716.0	59.72%	26171.7	54.14%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-4	-9.581e+00	0.0024	304.0	25.35%	10029.7	20.75%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-3	-9.138e+00	0.0027	834.0	69.56%	31161.8	64.46%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-3	-8.892e+00	0.0031	1010.0	84.24%	38728.4	80.11%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-3	-8.423e+00	0.0046	858.0	71.56%	32291.6	66.79%
STAT4(Stat)/CD4-Stat4-ChIP-Seq/Homer	NYTTCCWGGAAR	1e-3	-7.911e+00	0.0070	1116.0	93.08%	43639.3	90.27%
STAT6(Stat)/CD4-Stat6-ChIP-Seq/Homer	ABTTCYYRRGAA	1e-3	-7.589e+00	0.0089	893.0	74.48%	33914.7	70.15%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-3	-7.534e+00	0.0089	1019.0	84.99%	39330.2	81.35%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-3	-7.377e+00	0.0095	1134.0	94.58%	44547.9	92.15%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq/Homer	TACGTGCV	1e-3	-7.279e+00	0.0099	597.0	49.79%	21824.7	45.14%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-3	-7.272e+00	0.0099	1183.0	98.67%	47011.3	97.24%
HIF2a(HLH)/O785-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-2	-6.649e+00	0.0165	705.0	58.80%	26317.3	54.44%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq/Homer	CYTGTTTACWYW	1e-2	-6.565e+00	0.0170	1032.0	86.07%	40055.8	82.85%
CRX(Homeobox)/Retina-Crx-ChIP-Seq/Homer	GCTAATCC	1e-2	-6.503e+00	0.0172	1198.0	99.92%	47991.6	99.27%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq/Homer	AAACCACARM	1e-2	-6.305e+00	0.0199	1141.0	95.16%	45001.4	93.08%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq/Homer	VACAGGAAAT	1e-2	-6.242e+00	0.0202	921.0	76.81%	35352.3	73.13%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq/Homer	CTGTTTAC	1e-2	-6.212e+00	0.0202	1198.0	99.92%	48004.4	99.30%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-2	-6.093e+00	0.0216	397.0	33.11%	14164.7	29.30%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-2	-5.837e+00	0.0267	1113.0	92.83%	43767.6	90.53%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq/Homer	GGTTGCCATGGCAA	1e-2	-5.727e+00	0.0287	268.0	22.35%	9265.5	19.17%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-2	-5.543e+00	0.0332	1125.0	93.83%	44354.6	91.75%
BORIS(Zf)/K562-CTCFL-ChIP-Seq/Homer	CNNBRGCGCCCCCTGSTGGC	1e-2	-5.511e+00	0.0332	492.0	41.03%	18020.9	37.28%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-2	-5.438e+00	0.0343	166.0	13.84%	5482.1	11.34%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-2	-5.388e+00	0.0349	1189.0	99.17%	47479.6	98.21%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq/Homer	WAAGTAAACA	1e-2	-5.328e+00	0.0358	1090.0	90.91%	42810.1	88.55%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq/Homer	BTCAAGGTCA	1e-2	-5.117e+00	0.0429	906.0	75.56%	34957.7	72.31%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-2	-5.068e+00	0.0437	422.0	35.20%	15361.1	31.77%
CArG(MADS)/PUER-Srf-ChIP-Seq/Homer	CCATATATGGNM	1e-2	-4.988e+00	0.0459	667.0	55.63%	25155.0	52.03%
Stat3+il23(Stat)/CD4-Stat3-ChIP-Seq/Homer	SVYTTCCNGGAARB	1e-2	-4.931e+00	0.0472	1022.0	85.24%	39914.6	82.56%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-2	-4.859e+00	0.0494	1013.0	84.49%	39542.3	81.79%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-2	-4.801e+00	0.0509	278.0	23.19%	9823.2	20.32%
EBF(EBF)/proBcell-EBF-ChIP-Seq/Homer	DGTCCCYRGGGA	1e-2	-4.665e+00	0.0567	570.0	47.54%	21331.9	44.12%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq/Homer	SCTGTCAMTCAN	1e-2	-4.636e+00	0.0569	532.0	44.37%	19820.5	41.00%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq/Homer	NATTTCCNGGAAAT	1e-1	-4.542e+00	0.0610	648.0	54.05%	24501.5	50.68%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq/Homer	ACAGGAAGTG	1e-1	-4.511e+00	0.0614	1122.0	93.58%	44365.4	91.77%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq/Homer	ASWTCAAAGG	1e-1	-4.405e+00	0.0666	532.0	44.37%	19880.5	41.12%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-1	-4.379e+00	0.0668	1036.0	86.41%	40625.4	84.03%
Esrrb(NR)/mES-Esrrb-ChIP-Seq/Homer	KTGACCTTGA	1e-1	-4.344e+00	0.0676	1019.0	84.99%	39904.5	82.54%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-1	-4.179e+00	0.0779	564.0	47.04%	21220.4	43.89%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq/Homer	SAAACCACAG	1e-1	-4.124e+00	0.0806	1028.0	85.74%	40335.3	83.43%
EGR(Zf)/K562-EGR1-ChIP-Seq/Homer	TCCGCCCACGCA	1e-1	-3.978e+00	0.0912	446.0	37.20%	16577.2	34.29%
ERG(ETS)/VCaP-ERG-ChIP-Seq/Homer	ACAGGAAGTG	1e-1	-3.948e+00	0.0920	1185.0	98.83%	47378.1	98.00%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1	-3.690e+00	0.1167	1114.0	92.91%	44142.5	91.31%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-3.653e+00	0.1187	1139.0	95.00%	45258.6	93.62%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq/Homer	ATTTCCTGTN	1e-1	-3.602e+00	0.1224	1029.0	85.82%	40492.5	83.76%
Rfx1(HTH)/NPC-Rfx1-ChIP-Seq/Homer	KGTTGCCATGGCAA	1e-1	-3.551e+00	0.1263	461.0	38.45%	17291.9	35.77%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-1	-3.549e+00	0.1263	108.0	9.01%	3622.6	7.49%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq/Homer	ATGCCCTGAGGC	1e-1	-3.544e+00	0.1263	1010.0	84.24%	39700.7	82.12%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq/Homer	RRCAGCTGYTSY	1e-1	-3.464e+00	0.1304	993.0	82.82%	39002.0	80.67%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq/Homer	YCWGGAATGY	1e-1	-3.415e+00	0.1345	1014.0	84.57%	39900.6	82.53%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq/Homer	CARRGKBCAAAGTYCA	1e-1	-3.266e+00	0.1533	860.0	71.73%	33520.7	69.34%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq/Homer	TGACCTTTGCCCCA	1e-1	-3.065e+00	0.1842	1119.0	93.33%	44473.6	91.99%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq/Homer	MACAGGAAGT	1e-1	-2.969e+00	0.1993	605.0	50.46%	23235.5	48.06%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-2.946e+00	0.2005	1081.0	90.16%	42857.3	88.65%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq/Homer	CTGCGCATGCGC	1e-1	-2.922e+00	0.2020	174.0	14.51%	6235.0	12.90%
AP2gamma(AP2)/MCF7-TFAP2c-ChIP-Seq/Homer	HHTGSCCTSAGGSCA	1e-1	-2.902e+00	0.2028	1032.0	86.07%	40787.9	84.37%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq/Homer	ACTYKNATTCGTGNTACTTC	1e-1	-2.857e+00	0.2088	203.0	16.93%	7367.2	15.24%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-2.769e+00	0.2244	600.0	50.04%	23104.0	47.79%
Sox2(HMG)/mES-Sox2-ChIP-Seq/Homer	BCCATTGTTC	1e-1	-2.760e+00	0.2244	1050.0	87.57%	41583.3	86.01%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq/Homer	RACCGGAAGT	1e-1	-2.706e+00	0.2318	1064.0	88.74%	42190.0	87.27%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-1	-2.672e+00	0.2362	1144.0	95.41%	45638.9	94.40%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq/Homer	GYMATAAAAH	1e-1	-2.559e+00	0.2606	958.0	79.90%	37790.7	78.17%
Unknown/Homeobox/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-2.549e+00	0.2606	940.0	78.40%	37047.6	76.63%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-2.443e+00	0.2844	1021.0	85.15%	40449.8	83.67%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq/Homer	WGGGGATTTCCC	1e-1	-2.428e+00	0.2846	923.0	76.98%	36384.7	75.26%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-2.161e+00	0.3664	1012.0	84.40%	40158.5	83.07%
E2F1(E2F)/Hela-E2F1-ChIP-Seq/Hoemr	CWGGCGGGAA	1e0	-2.119e+00	0.3770	482.0	40.20%	18616.0	38.51%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq/Homer	AGGTCANTGACCTB	1e0	-2.077e+00	0.3878	814.0	67.89%	32043.5	66.28%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq/Homer	TAGGGCAAAGGTCA	1e0	-2.026e+00	0.4027	1136.0	94.75%	45413.3	93.94%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-2.003e+00	0.4065	177.0	14.76%	6587.3	13.63%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq/Homer	ASATCAAAGGVA	1e0	-1.966e+00	0.4165	771.0	64.30%	30338.2	62.75%
Znf263(Zf)/K562-Znf263-ChIP-Seq/Homer	CVGTSCTCCC	1e0	-1.956e+00	0.4165	1181.0	98.50%	47391.4	98.03%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.948e+00	0.4165	1064.0	88.74%	42391.4	87.69%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.845e+00	0.4524	1174.0	97.91%	47094.1	97.41%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.827e+00	0.4548	1176.0	98.08%	47185.4	97.60%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.773e+00	0.4745	44.0	3.67%	1522.1	3.15%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.771e+00	0.4745	638.0	53.21%	25039.1	51.79%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq/Homer	GAGGTCAAAGGTCA	1e0	-1.663e+00	0.5167	300.0	25.02%	11553.9	23.90%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.619e+00	0.5335	539.0	44.95%	21125.6	43.70%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq/Homer	VCAGCTGYTG	1e0	-1.614e+00	0.5335	1063.0	88.66%	42453.8	87.81%
RFX(HTH)/K562-RFX3-ChIP-Seq/Homer	CGGTTGCCATGGCAAC	1e0	-1.583e+00	0.5405	165.0	13.76%	6250.0	12.93%
Hoxc9/Ainv15-Hoxc9-ChIP-Seq/Homer	GGCCATAAATCA	1e0	-1.521e+00	0.5685	824.0	68.72%	32695.6	67.63%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-1.459e+00	0.5982	97.0	8.09%	3625.8	7.50%
ZFX(Zf)/mES-Zfx-ChIP-Seq/Homer	AGGCCTRG	1e0	-1.453e+00	0.5982	1126.0	93.91%	45125.5	93.34%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.441e+00	0.5982	462.0	38.53%	18124.8	37.49%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq/Homer	GATGACTCAGCA	1e0	-1.440e+00	0.5982	131.0	10.93%	4961.4	10.26%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.395e+00	0.6104	772.0	64.39%	30648.8	63.40%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq/Homer	ACTGAAACCA	1e0	-1.394e+00	0.6104	795.0	66.31%	31581.2	65.33%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq/Homer	GCTGTGGTTW	1e0	-1.394e+00	0.6104	1027.0	85.65%	41046.6	84.90%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.374e+00	0.6104	178.0	14.85%	6836.4	14.14%
ETS:E-box/HPC7-Scl-ChIP-Seq/Homer	AGGAARCAGCTG	1e0	-1.233e+00	0.6878	243.0	20.27%	9476.8	19.60%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.231e+00	0.6878	977.0	81.48%	39070.0	80.82%
NFkB-p50,p52(RHD)/p50-ChIP-Chip/Homer	GGGGGAATCCCC	1e0	-1.226e+00	0.6878	353.0	29.44%	13872.9	28.70%
GRE/RAW264.7-GRE-ChIP-Seq/Homer	VAGRACAKWCTGTYC	1e0	-1.222e+00	0.6878	488.0	40.70%	19288.0	39.90%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-1.196e+00	0.6878	922.0	76.90%	36845.7	76.21%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq/Homer	VNRVCAGCTGGY	1e0	-1.172e+00	0.6956	1122.0	93.58%	45040.9	93.17%
Tlx?/NPC-H3K4me1-ChIP-Seq/Homer	CTGGCAGSCTGCCA	1e0	-1.152e+00	0.7029	804.0	67.06%	32080.9	66.36%
ATF3(bZIP)/K562-ATF3-ChIP-Seq/Homer	SGGTCACGTGAC	1e0	-1.150e+00	0.7029	384.0	32.03%	15156.3	31.35%
p53(p53)/p53-ChIP-Chip/Homer	NRGACATGTCYRGACATGTC	1e0	-1.140e+00	0.7029	21.0	1.75%	751.3	1.55%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq/Homer	SGKCACGTGM	1e0	-1.136e+00	0.7029	388.0	32.36%	15324.8	31.70%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq/Homer	GTRGGTCASTGGGTCA	1e0	-1.129e+00	0.7029	495.0	41.28%	19625.2	40.59%
Klf4(Zf)/mES-Klf4-ChIP-Seq/Homer	GCCACACCCA	1e0	-1.128e+00	0.7029	873.0	72.81%	34891.3	72.17%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-1.104e+00	0.7029	918.0	76.56%	36731.4	75.98%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq/Homer	RGGTCTCTAACY	1e0	-1.098e+00	0.7029	619.0	51.63%	24638.2	50.96%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.090e+00	0.7029	1131.0	94.33%	45438.0	93.99%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.079e+00	0.7029	1197.0	99.83%	48207.9	99.72%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.073e+00	0.7029	1169.0	97.50%	47016.3	97.25%
EBF1(EBF)/Near-E2A-ChIP-Seq/Homer	GTCCCCWGGGGA	1e0	-1.055e+00	0.7029	1052.0	87.74%	42211.8	87.31%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.045e+00	0.7029	1181.0	98.50%	47524.3	98.30%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-1.041e+00	0.7029	30.0	2.50%	1116.0	2.31%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq/Homer	AVCCGGAAGT	1e0	-1.024e+00	0.7029	785.0	65.47%	31389.7	64.93%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq/Homer	AACCGGAAGT	1e0	-9.978e-01	0.7155	1160.0	96.75%	46660.5	96.52%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-9.910e-01	0.7155	1185.0	98.83%	47701.9	98.67%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq/Homer	VCCACGTG	1e0	-9.395e-01	0.7458	727.0	60.63%	29102.7	60.20%
GLI3(Zf)/GLI3-ChIP-Chip/Homer	CGTGGGTGGTCC	1e0	-8.994e-01	0.7699	384.0	32.03%	15312.4	31.67%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-8.558e-01	0.7977	177.0	14.76%	7028.8	14.54%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-8.438e-01	0.8007	704.0	58.72%	28243.8	58.42%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-8.435e-01	0.8007	1199.0	100.00%	48310.4	99.93%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-8.229e-01	0.8046	254.0	21.18%	10139.0	20.97%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-8.182e-01	0.8046	202.0	16.85%	8052.8	16.66%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq/Homer	GTCACGCTCSCTGM	1e0	-8.093e-01	0.8046	295.0	24.60%	11795.9	24.40%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-7.902e-01	0.8118	1025.0	85.49%	41246.1	85.32%
Erra(NR)/HepG2-Erra-ChIP-Seq/Homer	CAAAGGTCAG	1e0	-7.706e-01	0.8214	1197.0	99.83%	48230.6	99.76%
Eomes(T-box)/H9-Eomes-ChIP-Seq/Homer	AGGTGTTAAN	1e0	-7.195e-01	0.8579	1199.0	100.00%	48315.8	99.94%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-ChIP-Seq/Homer	ATTTGCATAACAATG	1e0	-6.986e-01	0.8693	453.0	37.78%	18242.4	37.73%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-6.840e-01	0.8754	455.0	37.95%	18335.6	37.93%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-6.817e-01	0.8754	133.0	11.09%	5354.2	11.07%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-6.723e-01	0.8754	531.0	44.29%	21409.6	44.29%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-6.595e-01	0.8772	113.0	9.42%	4559.6	9.43%
GRE(NR/IR3)/A549-GR-ChIP-Seq/Homer	NRGVACABNVTGTYCY	1e0	-6.448e-01	0.8836	289.0	24.10%	11673.8	24.15%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq/Homer	ATTTTCCATT	1e0	-6.363e-01	0.8846	1046.0	87.24%	42184.3	87.26%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-6.320e-01	0.8846	632.0	52.71%	25518.0	52.78%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-5.890e-01	0.9142	826.0	68.89%	33371.5	69.03%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-5.357e-01	0.9573	1076.0	89.74%	43450.9	89.88%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.330e-01	0.9573	225.0	18.77%	9176.9	18.98%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-5.105e-01	0.9679	183.0	15.26%	7491.5	15.50%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-5.072e-01	0.9679	405.0	33.78%	16483.3	34.10%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq/Homer	ASWTCCTGBT	1e0	-4.924e-01	0.9719	1107.0	92.33%	44713.2	92.49%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq/Homer	GCAGCCAAGCRTGACH	1e0	-4.909e-01	0.9719	801.0	66.81%	32461.5	67.15%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-4.738e-01	0.9766	1052.0	87.74%	42534.2	87.98%
USF1(HLH)/GM12878-Usf1-ChIP-Seq/Homer	SGTCACGTGR	1e0	-4.691e-01	0.9766	778.0	64.89%	31560.8	65.28%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	ATGATGCAAT	1e0	-4.649e-01	0.9766	460.0	38.37%	18751.9	38.79%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-4.616e-01	0.9766	39.0	3.25%	1642.6	3.40%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-4.474e-01	0.9766	1198.0	99.92%	48293.8	99.89%
Pax8(Paired/Homeobox)/Rat-Pax8-ChIP-Seq/Homer	GTCATGCHTGRCTGS	1e0	-4.413e-01	0.9766	772.0	64.39%	31350.6	64.85%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq/Homer	AGGCCTAG	1e0	-4.285e-01	0.9815	1174.0	97.91%	47386.6	98.02%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-4.257e-01	0.9815	16.0	1.33%	696.1	1.44%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq/Homer	RRSCACTYAA	1e0	-4.200e-01	0.9815	1198.0	99.92%	48295.9	99.90%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-4.038e-01	0.9865	996.0	83.07%	40360.1	83.48%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-3.810e-01	1.0000	377.0	31.44%	15493.8	32.05%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-3.798e-01	1.0000	762.0	63.55%	31023.1	64.17%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e0	-3.756e-01	1.0000	79.0	6.59%	3342.6	6.91%
HRE(HSF)/HepG2-HSF1-ChIP-Seq/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-3.746e-01	1.0000	339.0	28.27%	13960.8	28.88%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-3.709e-01	1.0000	751.0	62.64%	30593.9	63.28%
NF1(CTF)/LNCAP-NF1-ChIP-Seq/Homer	CYTGGCABNSTGCCAR	1e0	-3.566e-01	1.0000	783.0	65.30%	31897.0	65.98%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-3.473e-01	1.0000	1199.0	100.00%	48330.3	99.97%
HOXA9/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-3.448e-01	1.0000	903.0	75.31%	36714.9	75.94%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq/Homer	RCAGGATGTGGT	1e0	-3.367e-01	1.0000	249.0	20.77%	10346.3	21.40%
c-Myc/mES-cMyc-ChIP-Seq/Homer	VVCCACGTGG	1e0	-3.286e-01	1.0000	844.0	70.39%	34377.7	71.11%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-3.243e-01	1.0000	481.0	40.12%	19781.9	40.92%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq/Homer	YTGCCAAG	1e0	-3.238e-01	1.0000	1185.0	98.83%	47839.0	98.95%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e0	-2.838e-01	1.0000	137.0	11.43%	5817.2	12.03%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.833e-01	1.0000	1140.0	95.08%	46141.9	95.44%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-2.728e-01	1.0000	1199.0	100.00%	48333.3	99.98%
Gata1(Zf)/K562-GATA1-ChIP-Seq/Homer	SAGATAAGRV	1e0	-2.720e-01	1.0000	852.0	71.06%	34779.0	71.94%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq/Homer/	CYAAAAATAG	1e0	-2.611e-01	1.0000	996.0	83.07%	40517.4	83.81%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCATCY	1e0	-2.423e-01	1.0000	374.0	31.19%	15575.1	32.22%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-2.047e-01	1.0000	136.0	11.34%	5873.1	12.15%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e0	-2.024e-01	1.0000	1155.0	96.33%	46773.0	96.75%
p53(p53)/mES-cMyc-ChIP-Seq/Homer	ACATGCCCGGGCAT	1e0	-1.879e-01	1.0000	66.0	5.50%	2959.8	6.12%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq/Homer	GGTTAAWCATTAA	1e0	-1.875e-01	1.0000	366.0	30.53%	15355.9	31.76%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.851e-01	1.0000	180.0	15.01%	7728.1	15.99%
Nkx2.1(Homeobox)/H3122-NKX2.1-ChIP-Seq(GSE39998)/Homer	CCACTCAA	1e0	-1.788e-01	1.0000	1197.0	99.83%	48289.0	99.88%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.779e-01	1.0000	1157.0	96.50%	46866.9	96.94%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq/Homer	RGGTTACTANAGGTCA	1e0	-1.767e-01	1.0000	551.0	45.95%	22884.7	47.34%
SCL/HPC7-Scl-ChIP-Seq/Homer	AVCAGCTG	1e0	-1.488e-01	1.0000	1199.0	100.00%	48338.6	99.99%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq/Homer	AGGTGTCA	1e0	-1.488e-01	1.0000	1199.0	100.00%	48338.5	99.99%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.456e-01	1.0000	623.0	51.96%	25867.0	53.51%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.447e-01	1.0000	1035.0	86.32%	42225.6	87.34%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.369e-01	1.0000	1191.0	99.33%	48112.7	99.52%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq/Homer	ATTTGCATAW	1e0	-1.257e-01	1.0000	767.0	63.97%	31692.9	65.56%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq/Homer	RGCCATTAAC	1e0	-9.921e-02	1.0000	1199.0	100.00%	48340.2	99.99%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq/Homer	MAATCACTGC	1e0	-9.655e-02	1.0000	1061.0	88.49%	43329.1	89.63%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq/Homer	GYCATCMATCAT	1e0	-9.469e-02	1.0000	227.0	18.93%	9883.9	20.44%
Hoxb4/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-9.443e-02	1.0000	392.0	32.69%	16673.4	34.49%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-8.860e-02	1.0000	119.0	9.92%	5376.4	11.12%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-8.750e-02	1.0000	369.0	30.78%	15759.6	32.60%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-8.268e-02	1.0000	991.0	82.65%	40661.5	84.11%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-7.148e-02	1.0000	494.0	41.20%	20923.9	43.28%
HEB?/mES-Nanog-ChIP-Seq/Homer	CACAGCAGGGGG	1e0	-6.792e-02	1.0000	886.0	73.89%	36611.3	75.73%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-6.707e-02	1.0000	94.0	7.84%	4369.7	9.04%
ZBTB33/GM12878-ZBTB33-ChIP-Seq/Homer	GGVTCTCGCGAGAAC	1e0	-6.160e-02	1.0000	53.0	4.42%	2598.4	5.37%
n-Myc(HLH)/mES-nMyc-ChIP-Seq/Homer	VRCCACGTGG	1e0	-5.959e-02	1.0000	930.0	77.56%	38373.0	79.37%
E2A(HLH)/proBcell-E2A-ChIP-Seq/Homer	DNRCAGCTGY	1e0	-5.127e-02	1.0000	1171.0	97.66%	47505.8	98.26%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq/Homer	YCATYAATCA	1e0	-4.418e-02	1.0000	1006.0	83.90%	41391.7	85.62%
p63(p53)/Keratinocyte-p63-ChIP-Seq/Homer	NNDRCATGYCYNRRCATGYH	1e0	-4.392e-02	1.0000	691.0	57.63%	29018.2	60.02%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-3.936e-02	1.0000	1145.0	95.50%	46617.6	96.43%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-3.762e-02	1.0000	395.0	32.94%	17095.4	35.36%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-3.447e-02	1.0000	248.0	20.68%	11041.4	22.84%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq/Homer	ATATGCAAAT	1e0	-3.379e-02	1.0000	604.0	50.38%	25613.1	52.98%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-3.153e-02	1.0000	90.0	7.51%	4339.5	8.98%
GATA:SCL/Ter119-SCL-ChIP-Seq/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-3.125e-02	1.0000	255.0	21.27%	11359.1	23.50%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-3.119e-02	1.0000	140.0	11.68%	6503.7	13.45%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq/Homer	RTCACSCCAY	1e0	-2.742e-02	1.0000	662.0	55.21%	28002.1	57.92%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)	NTATYGATCH	1e0	-2.724e-02	1.0000	797.0	66.47%	33367.5	69.02%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq/Homer	VAGGTCACNSTGACC	1e0	-2.613e-02	1.0000	564.0	47.04%	24079.4	49.81%
Max(HLH)/K562-Max-ChIP-Seq/Homer	RCCACGTGGYYN	1e0	-2.577e-02	1.0000	933.0	77.81%	38699.3	80.05%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-2.135e-02	1.0000	204.0	17.01%	9310.9	19.26%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq/Homer	GATGASTCATCN	1e0	-1.618e-02	1.0000	431.0	35.95%	18811.3	38.91%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.352e-02	1.0000	14.0	1.17%	945.4	1.96%
Gata2(Zf)/K562-GATA2-ChIP-Seq/Homer	BBCTTATCTS	1e0	-1.033e-02	1.0000	875.0	72.98%	36660.0	75.83%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-7.942e-03	1.0000	1196.0	99.75%	48313.3	99.94%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-7.003e-03	1.0000	896.0	74.73%	37554.7	77.68%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-5.831e-03	1.0000	865.0	72.14%	36394.6	75.28%
Lhx3-like?(Homeobox)/Forebrain-p300-ChIP-Seq/Homer	CTAATTAGCH	1e0	-3.219e-03	1.0000	1001.0	83.49%	41682.2	86.22%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-2.841e-03	1.0000	591.0	49.29%	25738.1	53.24%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq/Homer	ACCRTGACTAATTNN	1e0	-2.278e-03	1.0000	400.0	33.36%	18010.3	37.25%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.733e-03	1.0000	714.0	59.55%	30745.9	63.60%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq/Homer	CGGTCACSCCAC	1e0	-1.022e-03	1.0000	539.0	44.95%	23863.8	49.36%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-5.180e-04	1.0000	379.0	31.61%	17441.9	36.08%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-3.070e-04	1.0000	232.0	19.35%	11319.4	23.41%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-2.910e-04	1.0000	1020.0	85.07%	42702.1	88.33%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq/Homer	ATGACGTCATCY	1e0	-0.000e+00	1.0000	617.0	51.46%	28382.8	58.71%