Datasetdata_collapsed_to_symbols.class.cls
#24hr_versus_0hr.class.cls
#24hr_versus_0hr_repos
Phenotypeclass.cls#24hr_versus_0hr_repos
Upregulated in class24hr
GeneSetAMUNDSON_RESPONSE_TO_ARSENITE
Enrichment Score (ES)0.44239908
Normalized Enrichment Score (NES)1.7747608
Nominal p-value0.0
FDR q-value0.54110265
FWER p-Value0.599
Table: GSEA Results Summary



Fig 1: Enrichment plot: AMUNDSON_RESPONSE_TO_ARSENITE   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEGENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1MAFGMAFG
Entrez,  Source
v-maf musculoaponeurotic fibrosarcoma oncogene homolog G (avian)144.6910.0140Yes
2AP4B1AP4B1
Entrez,  Source
adaptor-related protein complex 4, beta 1 subunit154.6740.0290Yes
3AHSA1AHSA1
Entrez,  Source
AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)344.5140.0422Yes
4MLLT11MLLT11
Entrez,  Source
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11374.5080.0565Yes
5PRNPPRNP
Entrez,  Source
prion protein (p27-30) (Creutzfeldt-Jakob disease, Gerstmann-Strausler-Scheinker syndrome, fatal familial insomnia)464.4740.0703Yes
6SOD1SOD1
Entrez,  Source
superoxide dismutase 1, soluble (amyotrophic lateral sclerosis 1 (adult))694.3760.0827Yes
7PRKCAPRKCA
Entrez,  Source
protein kinase C, alpha1594.1140.0894Yes
8RIT1RIT1
Entrez,  Source
Ras-like without CAAX 11894.0470.1003Yes
9E2F6E2F6
Entrez,  Source
E2F transcription factor 62124.0120.1115Yes
10TFE3TFE3
Entrez,  Source
transcription factor binding to IGHM enhancer 32223.9990.1237Yes
11STK17ASTK17A
Entrez,  Source
serine/threonine kinase 17a (apoptosis-inducing)2353.9750.1356Yes
12ATP2C1ATP2C1
Entrez,  Source
ATPase, Ca++ transporting, type 2C, member 13563.7910.1390Yes
13CTHCTH
Entrez,  Source
cystathionase (cystathionine gamma-lyase)3733.7610.1499Yes
14IL10RAIL10RA
Entrez,  Source
interleukin 10 receptor, alpha4243.6900.1581Yes
15GLAGLA
Entrez,  Source
galactosidase, alpha4923.6180.1648Yes
16MAFFMAFF
Entrez,  Source
v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)4953.6170.1762Yes
17RPS6KC1RPS6KC1
Entrez,  Source
ribosomal protein S6 kinase, 52kDa, polypeptide 15193.5840.1861Yes
18UPP1UPP1
Entrez,  Source
uridine phosphorylase 15313.5740.1967Yes
19UBE2HUBE2H
Entrez,  Source
ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast)5753.5080.2048Yes
20ME1ME1
Entrez,  Source
malic enzyme 1, NADP(+)-dependent, cytosolic6203.4740.2128Yes
21CDC42EP3CDC42EP3
Entrez,  Source
CDC42 effector protein (Rho GTPase binding) 36293.4670.2233Yes
22HSPA1LHSPA1L
Entrez,  Source
heat shock 70kDa protein 1-like6313.4650.2343Yes
23TNFRSF10BTNFRSF10B
Entrez,  Source
tumor necrosis factor receptor superfamily, member 10b7013.4000.2402Yes
24BAG2BAG2
Entrez,  Source
BCL2-associated athanogene 27873.3170.2447Yes
25HSPA4HSPA4
Entrez,  Source
heat shock 70kDa protein 48043.2900.2541Yes
26PLOD1PLOD1
Entrez,  Source
procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 18393.2550.2620Yes
27HSPA4LHSPA4L
Entrez,  Source
heat shock 70kDa protein 4-like8543.2320.2714Yes
28CPEB4CPEB4
Entrez,  Source
cytoplasmic polyadenylation element binding protein 48653.2240.2810Yes
29ADAM17ADAM17
Entrez,  Source
ADAM metallopeptidase domain 17 (tumor necrosis factor, alpha, converting enzyme)9113.1760.2879Yes
30DNAJA1DNAJA1
Entrez,  Source
DnaJ (Hsp40) homolog, subfamily A, member 19713.1020.2935Yes
31FHL2FHL2
Entrez,  Source
four and a half LIM domains 210992.9750.2938Yes
32FXR1FXR1
Entrez,  Source
fragile X mental retardation, autosomal homolog 111282.9470.3012Yes
33ETS2ETS2
Entrez,  Source
v-ets erythroblastosis virus E26 oncogene homolog 2 (avian)11622.9210.3082Yes
34GTF3C3GTF3C3
Entrez,  Source
general transcription factor IIIC, polypeptide 3, 102kDa12612.8410.3101Yes
35HSPE1HSPE1
Entrez,  Source
heat shock 10kDa protein 1 (chaperonin 10)13962.7260.3091Yes
36EIF2S2EIF2S2
Entrez,  Source
eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa13972.7260.3179Yes
37ZNF187ZNF187
Entrez,  Source
zinc finger protein 18714182.7140.3251Yes
38DNAJB6DNAJB6
Entrez,  Source
DnaJ (Hsp40) homolog, subfamily B, member 614512.6830.3314Yes
39CDC42EP1CDC42EP1
Entrez,  Source
CDC42 effector protein (Rho GTPase binding) 114872.6440.3373Yes
40TMF1TMF1
Entrez,  Source
TATA element modulatory factor 115132.6200.3439Yes
41MAN1A2MAN1A2
Entrez,  Source
mannosidase, alpha, class 1A, member 215882.5640.3467Yes
42NFE2L2NFE2L2
Entrez,  Source
nuclear factor (erythroid-derived 2)-like 216062.5500.3537Yes
43TIMM17ATIMM17A
Entrez,  Source
translocase of inner mitochondrial membrane 17 homolog A (yeast)16142.5450.3613Yes
44MAPK7MAPK7
Entrez,  Source
mitogen-activated protein kinase 716202.5410.3691Yes
45SERPINH1SERPINH1
Entrez,  Source
serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)16722.4930.3734Yes
46ATF3ATF3
Entrez,  Source
activating transcription factor 316992.4740.3794Yes
47ST13ST13
Entrez,  Source
suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)17132.4670.3864Yes
48SLC1A4SLC1A4
Entrez,  Source
solute carrier family 1 (glutamate/neutral amino acid transporter), member 417452.4440.3920Yes
49HIBCHHIBCH
Entrez,  Source
3-hydroxyisobutyryl-Coenzyme A hydrolase18152.3930.3946Yes
50IL6STIL6ST
Entrez,  Source
interleukin 6 signal transducer (gp130, oncostatin M receptor)18682.3550.3984Yes
51DDIT3DDIT3
Entrez,  Source
DNA-damage-inducible transcript 319702.2870.3983Yes
52PLTPPLTP
Entrez,  Source
phospholipid transfer protein19922.2730.4041Yes
53TNKSTNKS
Entrez,  Source
tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase20452.2270.4074Yes
54IGF2RIGF2R
Entrez,  Source
insulin-like growth factor 2 receptor20512.2230.4142Yes
55WARSWARS
Entrez,  Source
tryptophanyl-tRNA synthetase20882.1970.4186Yes
56NFE2L1NFE2L1
Entrez,  Source
nuclear factor (erythroid-derived 2)-like 121232.1710.4231Yes
57BMP2KBMP2K
Entrez,  Source
BMP2 inducible kinase21772.1290.4261Yes
58RELBRELB
Entrez,  Source
v-rel reticuloendotheliosis viral oncogene homolog B, nuclear factor of kappa light polypeptide gene enhancer in B-cells 3 (avian)22372.0860.4285Yes
59CEBPBCEBPB
Entrez,  Source
CCAAT/enhancer binding protein (C/EBP), beta22732.0560.4325Yes
60IARSIARS
Entrez,  Source
isoleucine-tRNA synthetase23851.9880.4308Yes
61ATP6V0A1ATP6V0A1
Entrez,  Source
ATPase, H+ transporting, lysosomal V0 subunit a123881.9870.4370Yes
62CCT8CCT8
Entrez,  Source
chaperonin containing TCP1, subunit 8 (theta)24021.9750.4424Yes
63GOLGB1GOLGB1
Entrez,  Source
golgi autoantigen, golgin subfamily b, macrogolgin (with transmembrane signal), 125671.8650.4364No
64ZNF24ZNF24
Entrez,  Source
zinc finger protein 2426391.8250.4371No
65ITGAXITGAX
Entrez,  Source
integrin, alpha X (complement component 3 receptor 4 subunit)26981.7890.4386No
66KIFC3KIFC3
Entrez,  Source
kinesin family member C327781.7480.4385No
67MMDMMD
Entrez,  Source
monocyte to macrophage differentiation-associated29101.6690.4343No
68GARSGARS
Entrez,  Source
glycyl-tRNA synthetase29151.6660.4393No
69CCPG1CCPG1
Entrez,  Source
cell cycle progression 130201.6100.4369No
70DNAJB4DNAJB4
Entrez,  Source
DnaJ (Hsp40) homolog, subfamily B, member 431501.5360.4324No
71ARIH1ARIH1
Entrez,  Source
ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila)33271.4350.4242No
72ATP6V1C1ATP6V1C1
Entrez,  Source
ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C133621.4190.4262No
73UBE2BUBE2B
Entrez,  Source
ubiquitin-conjugating enzyme E2B (RAD6 homolog)35211.3570.4191No
74ZFXZFX
Entrez,  Source
zinc finger protein, X-linked35321.3520.4227No
75CEBPGCEBPG
Entrez,  Source
CCAAT/enhancer binding protein (C/EBP), gamma35881.3230.4229No
76BCAS2BCAS2
Entrez,  Source
breast carcinoma amplified sequence 237151.2640.4178No
77ARNTLARNTL
Entrez,  Source
aryl hydrocarbon receptor nuclear translocator-like38021.2280.4154No
78IGFBP6IGFBP6
Entrez,  Source
insulin-like growth factor binding protein 638261.2210.4177No
79STK10STK10
Entrez,  Source
serine/threonine kinase 1038991.1830.4162No
80ASNSASNS
Entrez,  Source
asparagine synthetase39671.1560.4151No
81SLC7A5SLC7A5
Entrez,  Source
solute carrier family 7 (cationic amino acid transporter, y+ system), member 541361.0840.4063No
82TANKTANK
Entrez,  Source
TRAF family member-associated NFKB activator42081.0620.4045No
83ATP6V0D1ATP6V0D1
Entrez,  Source
ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d142531.0520.4047No
84NEU1NEU1
Entrez,  Source
sialidase 1 (lysosomal sialidase)43031.0330.4044No
85MARSMARS
Entrez,  Source
methionine-tRNA synthetase43511.0160.4042No
86HEXAHEXA
Entrez,  Source
hexosaminidase A (alpha polypeptide)44020.9940.4038No
87SIAH2SIAH2
Entrez,  Source
seven in absentia homolog 2 (Drosophila)44230.9870.4055No
88CHERPCHERP
Entrez,  Source
calcium homeostasis endoplasmic reticulum protein44290.9840.4083No
89RPL27RPL27
Entrez,  Source
ribosomal protein L2744640.9730.4089No
90CARSCARS
Entrez,  Source
cysteinyl-tRNA synthetase46080.9160.4014No
91CLK1CLK1
Entrez,  Source
CDC-like kinase 146110.9150.4042No
92TPP1TPP1
Entrez,  Source
tripeptidyl peptidase I47620.8610.3961No
93SPRR3SPRR3
Entrez,  Source
small proline-rich protein 348610.8290.3916No
94GTF2H1GTF2H1
Entrez,  Source
general transcription factor IIH, polypeptide 1, 62kDa48630.8280.3941No
95RALGDSRALGDS
Entrez,  Source
ral guanine nucleotide dissociation stimulator52450.7030.3686No
96BCAT1BCAT1
Entrez,  Source
branched chain aminotransferase 1, cytosolic54750.6320.3539No
97MT3MT3
Entrez,  Source
metallothionein 3 (growth inhibitory factor (neurotrophic))57460.5530.3360No
98SH2D3CSH2D3C
Entrez,  Source
SH2 domain containing 3C58720.5160.3286No
99OGTOGT
Entrez,  Source
O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)59820.4890.3222No
100DYRK1ADYRK1A
Entrez,  Source
dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A60660.4660.3176No
101POLR1CPOLR1C
Entrez,  Source
polymerase (RNA) I polypeptide C, 30kDa62040.4300.3090No
102CLK2CLK2
Entrez,  Source
CDC-like kinase 263270.3970.3014No
103APBA2APBA2
Entrez,  Source
amyloid beta (A4) precursor protein-binding, family A, member 2 (X11-like)64840.3600.2912No
104HMBSHMBS
Entrez,  Source
hydroxymethylbilane synthase66540.3180.2799No
105FUT4FUT4
Entrez,  Source
fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific)70400.2150.2525No
106SLC22A1SLC22A1
Entrez,  Source
solute carrier family 22 (organic cation transporter), member 172040.1730.2412No
107ZNF43ZNF43
Entrez,  Source
zinc finger protein 4372460.1620.2387No
108PFDN5PFDN5
Entrez,  Source
prefoldin subunit 573180.1420.2340No
109EIF4EBP1EIF4EBP1
Entrez,  Source
eukaryotic translation initiation factor 4E binding protein 175480.0850.2176No
110DNAJB5DNAJB5
Entrez,  Source
DnaJ (Hsp40) homolog, subfamily B, member 575890.0730.2149No
111BCL2L2BCL2L2
Entrez,  Source
BCL2-like 277540.0250.2030No
112TLE4TLE4
Entrez,  Source
transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)77700.0220.2020No
113ASB3ASB3
Entrez,  Source
ankyrin repeat and SOCS box-containing 37984-0.0360.1866No
114STC2STC2
Entrez,  Source
stanniocalcin 28194-0.0950.1716No
115TSC1TSC1
Entrez,  Source
tuberous sclerosis 18199-0.0970.1716No
116SCRN3SCRN3
Entrez,  Source
secernin 38392-0.1510.1581No
117FJX1FJX1
Entrez,  Source
four jointed box 1 (Drosophila)8572-0.2050.1457No
118TAP1TAP1
Entrez,  Source
transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)8782-0.2730.1314No
119RBM5RBM5
Entrez,  Source
RNA binding motif protein 58925-0.3220.1220No
120PEX11BPEX11B
Entrez,  Source
peroxisomal biogenesis factor 11B8950-0.3320.1214No
121GUCY1A3GUCY1A3
Entrez,  Source
guanylate cyclase 1, soluble, alpha 39066-0.3710.1142No
122NPM1NPM1
Entrez,  Source
nucleophosmin (nucleolar phosphoprotein B23, numatrin)9295-0.4410.0990No
123TBL1XTBL1X
Entrez,  Source
transducin (beta)-like 1X-linked9306-0.4480.0997No
124KCNF1KCNF1
Entrez,  Source
potassium voltage-gated channel, subfamily F, member 19377-0.4780.0961No
125STAT6STAT6
Entrez,  Source
signal transducer and activator of transcription 6, interleukin-4 induced9466-0.5090.0913No
126SLC43A1SLC43A1
Entrez,  Source
solute carrier family 43, member 19594-0.5510.0838No
127ZNF85ZNF85
Entrez,  Source
zinc finger protein 859653-0.5750.0814No
128TUBGCP3TUBGCP3
Entrez,  Source
tubulin, gamma complex associated protein 39676-0.5840.0817No
129ID3ID3
Entrez,  Source
inhibitor of DNA binding 3, dominant negative helix-loop-helix protein9773-0.6320.0767No
130CHD2CHD2
Entrez,  Source
chromodomain helicase DNA binding protein 29783-0.6360.0781No
131ST3GAL5ST3GAL5
Entrez,  Source
ST3 beta-galactoside alpha-2,3-sialyltransferase 59931-0.6910.0696No
132RRAGARRAGA
Entrez,  Source
Ras-related GTP binding A10031-0.7440.0648No
133MT1XMT1X
Entrez,  Source
metallothionein 1X10035-0.7450.0669No
134SPARCL1SPARCL1
Entrez,  Source
SPARC-like 1 (mast9, hevin)10075-0.7650.0665No
135ESRRAESRRA
Entrez,  Source
estrogen-related receptor alpha10104-0.7790.0670No
136MT1EMT1E
Entrez,  Source
metallothionein 1E (functional)10167-0.8100.0651No
137JUNBJUNB
Entrez,  Source
jun B proto-oncogene10192-0.8220.0660No
138TULP4TULP4
Entrez,  Source
tubby like protein 410273-0.8610.0629No
139REV3LREV3L
Entrez,  Source
REV3-like, catalytic subunit of DNA polymerase zeta (yeast)10333-0.8880.0614No
140LEPRLEPR
Entrez,  Source
leptin receptor10342-0.8950.0637No
141LYNLYN
Entrez,  Source
v-yes-1 Yamaguchi sarcoma viral related oncogene homolog10487-0.9620.0563No
142ANLNANLN
Entrez,  Source
anillin, actin binding protein10497-0.9670.0588No
143DAZAP2DAZAP2
Entrez,  Source
DAZ associated protein 210548-0.9900.0583No
144MT1GMT1G
Entrez,  Source
metallothionein 1G10690-1.0620.0514No
145MT1BMT1B
Entrez,  Source
metallothionein 1B (functional)10738-1.0900.0515No
146BCL3BCL3
Entrez,  Source
B-cell CLL/lymphoma 310749-1.0970.0543No
147AKAP1AKAP1
Entrez,  Source
A kinase (PRKA) anchor protein 110771-1.1070.0563No
148RPUSD2RPUSD2
Entrez,  Source
RNA pseudouridylate synthase domain containing 210888-1.1680.0516No
149KLF12KLF12
Entrez,  Source
Kruppel-like factor 1210962-1.2030.0501No
150TRIP13TRIP13
Entrez,  Source
thyroid hormone receptor interactor 1311142-1.2940.0412No
151MT1LMT1L
Entrez,  Source
metallothionein 1L (pseudogene)11169-1.3100.0435No
152HIST1H2BDHIST1H2BD
Entrez,  Source
histone cluster 1, H2bd11355-1.4090.0346No
153RAD51AP1RAD51AP1
Entrez,  Source
RAD51 associated protein 111564-1.5490.0244No
154HPS5HPS5
Entrez,  Source
Hermansky-Pudlak syndrome 511821-1.7130.0112No
155EXT1EXT1
Entrez,  Source
exostoses (multiple) 111856-1.7440.0143No
156HYAL2HYAL2
Entrez,  Source
hyaluronoglucosaminidase 211942-1.7980.0139No
157ADNPADNP
Entrez,  Source
activity-dependent neuroprotector11975-1.8220.0174No
158PIK3R4PIK3R4
Entrez,  Source
phosphoinositide-3-kinase, regulatory subunit 4, p15012105-1.9210.0141No
159CITCIT
Entrez,  Source
citron (rho-interacting, serine/threonine kinase 21)12143-1.9490.0177No
160GRNGRN
Entrez,  Source
granulin12406-2.1780.0056No
161ZNF184ZNF184
Entrez,  Source
zinc finger protein 18412641-2.398-0.0038No
162DAG1DAG1
Entrez,  Source
dystroglycan 1 (dystrophin-associated glycoprotein 1)12693-2.4590.0004No
163CTDSP1CTDSP1
Entrez,  Source
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 112818-2.594-0.0004No
164B3GNT6B3GNT6
Entrez,  Source
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)12828-2.6080.0074No
165MT1FMT1F
Entrez,  Source
metallothionein 1F (functional)12932-2.7190.0086No
166ISYNA1ISYNA1
Entrez,  Source
-13395-3.305-0.0145No
167DLC1DLC1
Entrez,  Source
deleted in liver cancer 113576-3.610-0.0161No
168NKTRNKTR
Entrez,  Source
natural killer-tumor recognition sequence13642-3.753-0.0088No
169PAXIP1PAXIP1
Entrez,  Source
PAX interacting (with transcription-activation domain) protein 113719-3.956-0.0016No
170CDK6CDK6
Entrez,  Source
cyclin-dependent kinase 613795-4.2140.0064No
Table: GSEA details [plain text format]



Fig 2: AMUNDSON_RESPONSE_TO_ARSENITE   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: AMUNDSON_RESPONSE_TO_ARSENITE: Random ES distribution   
Gene set null distribution of ES for AMUNDSON_RESPONSE_TO_ARSENITE