| Dataset | data_collapsed_to_symbols.class.cls #4hr_versus_0hr.class.cls #4hr_versus_0hr_repos |
| Phenotype | class.cls#4hr_versus_0hr_repos |
| Upregulated in class | 0hr |
| GeneSet | GU_PDEF_TARGETS_DN |
| Enrichment Score (ES) | -0.54512894 |
| Normalized Enrichment Score (NES) | -1.5323718 |
| Nominal p-value | 0.0 |
| FDR q-value | 1.0 |
| FWER p-Value | 1.0 |

| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | SMURF1 | SMURF1 Entrez,  Source | SMAD specific E3 ubiquitin protein ligase 1 | 504 | 2.593 | 0.0856 | No |
| 2 | NKX2-5 | NKX2-5 Entrez,  Source | NK2 transcription factor related, locus 5 (Drosophila) | 3330 | 0.732 | -0.0837 | No |
| 3 | FOXC1 | FOXC1 Entrez,  Source | forkhead box C1 | 3809 | 0.617 | -0.0892 | No |
| 4 | KRT18 | KRT18 Entrez,  Source | keratin 18 | 4094 | 0.550 | -0.0838 | No |
| 5 | PIK3R3 | PIK3R3 Entrez,  Source | phosphoinositide-3-kinase, regulatory subunit 3 (p55, gamma) | 5247 | 0.320 | -0.1518 | No |
| 6 | KRT3 | KRT3 Entrez,  Source | keratin 3 | 5469 | 0.280 | -0.1546 | No |
| 7 | EIF2B2 | EIF2B2 Entrez,  Source | eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa | 6363 | 0.139 | -0.2124 | No |
| 8 | EIF1AX | EIF1AX Entrez,  Source | eukaryotic translation initiation factor 1A, X-linked | 8146 | -0.137 | -0.3345 | No |
| 9 | THBS1 | THBS1 Entrez,  Source | thrombospondin 1 | 8270 | -0.160 | -0.3358 | No |
| 10 | PARVA | PARVA Entrez,  Source | parvin, alpha | 9722 | -0.395 | -0.4219 | No |
| 11 | PIK3CB | PIK3CB Entrez,  Source | phosphoinositide-3-kinase, catalytic, beta polypeptide | 10970 | -0.637 | -0.4819 | No |
| 12 | FOXA1 | FOXA1 Entrez,  Source | forkhead box A1 | 11365 | -0.743 | -0.4754 | No |
| 13 | CDH1 | CDH1 Entrez,  Source | cadherin 1, type 1, E-cadherin (epithelial) | 12333 | -1.061 | -0.4952 | Yes |
| 14 | VEGFC | VEGFC Entrez,  Source | vascular endothelial growth factor C | 12836 | -1.307 | -0.4700 | Yes |
| 15 | TGFB2 | TGFB2 Entrez,  Source | transforming growth factor, beta 2 | 13219 | -1.632 | -0.4207 | Yes |
| 16 | ITGB4 | ITGB4 Entrez,  Source | integrin, beta 4 | 13341 | -1.778 | -0.3458 | Yes |
| 17 | PIK3R4 | PIK3R4 Entrez,  Source | phosphoinositide-3-kinase, regulatory subunit 4, p150 | 13431 | -1.907 | -0.2626 | Yes |
| 18 | INHBB | INHBB Entrez,  Source | inhibin, beta B (activin AB beta polypeptide) | 13484 | -1.979 | -0.1732 | Yes |
| 19 | KRT19 | KRT19 Entrez,  Source | keratin 19 | 13538 | -2.082 | -0.0791 | Yes |
| 20 | KRT8 | KRT8 Entrez,  Source | keratin 8 | 13594 | -2.210 | 0.0208 | Yes |

