Datasetdata_collapsed_to_symbols.class.cls
#4hr_versus_0hr.class.cls
#4hr_versus_0hr_repos
Phenotypeclass.cls#4hr_versus_0hr_repos
Upregulated in class0hr
GeneSetKEGG_SYSTEMIC_LUPUS_ERYTHEMATOSUS
Enrichment Score (ES)-0.526554
Normalized Enrichment Score (NES)-1.4138219
Nominal p-value0.103950106
FDR q-value1.0
FWER p-Value1.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: KEGG_SYSTEMIC_LUPUS_ERYTHEMATOSUS   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEGENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1C1SC1S
Entrez,  Source
complement component 1, s subcomponent1863.2810.0312No
2CD86CD86
Entrez,  Source
CD86 molecule19481.247-0.0794No
3C3C3
Entrez,  Source
complement component 319701.236-0.0641No
4SSBSSB
Entrez,  Source
Sjogren syndrome antigen B (autoantigen La)28610.862-0.1169No
5FCGR1AFCGR1A
Entrez,  Source
Fc fragment of IgG, high affinity Ia, receptor (CD64)29350.838-0.1108No
6FCGR2AFCGR2A
Entrez,  Source
Fc fragment of IgG, low affinity IIa, receptor (CD32)36520.655-0.1537No
7C1RC1R
Entrez,  Source
complement component 1, r subcomponent37130.640-0.1494No
8CD40CD40
Entrez,  Source
CD40 molecule, TNF receptor superfamily member 538440.609-0.1505No
9TNFTNF
Entrez,  Source
tumor necrosis factor (TNF superfamily, member 2)42590.513-0.1735No
10ACTN4ACTN4
Entrez,  Source
actinin, alpha 447690.406-0.2049No
11C2C2
Entrez,  Source
complement component 257540.233-0.2730No
12HLA-DOAHLA-DOA
Entrez,  Source
major histocompatibility complex, class II, DO alpha57900.227-0.2725No
13H2AFJH2AFJ
Entrez,  Source
H2A histone family, member J58150.224-0.2712No
14H2AFB3H2AFB3
Entrez,  Source
H2A histone family, member B362670.156-0.3017No
15HIST1H4EHIST1H4E
Entrez,  Source
histone cluster 1, H4e66160.097-0.3256No
16SNRPD3SNRPD3
Entrez,  Source
small nuclear ribonucleoprotein D3 polypeptide 18kDa66400.094-0.3260No
17HLA-DQB1HLA-DQB1
Entrez,  Source
major histocompatibility complex, class II, DQ beta 171400.018-0.3619No
18HIST1H4BHIST1H4B
Entrez,  Source
histone cluster 1, H4b7443-0.027-0.3835No
19HIST1H4LHIST1H4L
Entrez,  Source
histone cluster 1, H4l7742-0.074-0.4041No
20SNRPD1SNRPD1
Entrez,  Source
small nuclear ribonucleoprotein D1 polypeptide 16kDa7851-0.093-0.4106No
21TRIM21TRIM21
Entrez,  Source
tripartite motif-containing 217931-0.105-0.4149No
22HIST1H2ABHIST1H2AB
Entrez,  Source
histone cluster 1, H2ab7964-0.111-0.4157No
23HIST1H4DHIST1H4D
Entrez,  Source
histone cluster 1, H4d7967-0.111-0.4144No
24HIST1H4CHIST1H4C
Entrez,  Source
histone cluster 1, H4c8192-0.144-0.4286No
25HIST1H2BNHIST1H2BN
Entrez,  Source
histone cluster 1, H2bn8202-0.145-0.4273No
26C8AC8A
Entrez,  Source
complement component 8, alpha polypeptide8452-0.189-0.4428No
27HLA-DOBHLA-DOB
Entrez,  Source
major histocompatibility complex, class II, DO beta8665-0.222-0.4551No
28HLA-DRB1HLA-DRB1
Entrez,  Source
major histocompatibility complex, class II, DR beta 18729-0.234-0.4565No
29C8GC8G
Entrez,  Source
complement component 8, gamma polypeptide8762-0.240-0.4555No
30ACTN1ACTN1
Entrez,  Source
actinin, alpha 19211-0.313-0.4837No
31HIST2H2ABHIST2H2AB
Entrez,  Source
histone cluster 2, H2ab9268-0.323-0.4834No
32C7C7
Entrez,  Source
complement component 79599-0.376-0.5022No
33H2AFYH2AFY
Entrez,  Source
H2A histone family, member Y9746-0.400-0.5073No
34SNRPBSNRPB
Entrez,  Source
small nuclear ribonucleoprotein polypeptides B and B19853-0.422-0.5093No
35H2AFXH2AFX
Entrez,  Source
H2A histone family, member X9862-0.423-0.5041No
36HIST1H2ALHIST1H2AL
Entrez,  Source
histone cluster 1, H2al9888-0.428-0.5001No
37C4AC4A
Entrez,  Source
complement component 4A (Rodgers blood group)9891-0.429-0.4944No
38HIST1H4JHIST1H4J
Entrez,  Source
histone cluster 1, H4j9894-0.429-0.4887No
39HIST1H3IHIST1H3I
Entrez,  Source
histone cluster 1, H3i9930-0.436-0.4853No
40HIST1H2ACHIST1H2AC
Entrez,  Source
histone cluster 1, H2ac9934-0.436-0.4795No
41CTSGCTSG
Entrez,  Source
cathepsin G10095-0.463-0.4848No
42HIST1H4KHIST1H4K
Entrez,  Source
histone cluster 1, H4k10258-0.492-0.4899No
43ACTN3ACTN3
Entrez,  Source
actinin, alpha 310273-0.494-0.4841No
44HLA-DQA1HLA-DQA1
Entrez,  Source
major histocompatibility complex, class II, DQ alpha 110308-0.501-0.4798No
45HIST1H4IHIST1H4I
Entrez,  Source
histone cluster 1, H4i10386-0.513-0.4784No
46HIST1H2BJHIST1H2BJ
Entrez,  Source
histone cluster 1, H2bj10844-0.607-0.5032No
47HIST1H2AEHIST1H2AE
Entrez,  Source
histone cluster 1, H2ae11091-0.667-0.5120No
48HIST1H2BGHIST1H2BG
Entrez,  Source
histone cluster 1, H2bg11293-0.724-0.5167Yes
49HIST1H4FHIST1H4F
Entrez,  Source
histone cluster 1, H4f11324-0.732-0.5089Yes
50HLA-DPA1HLA-DPA1
Entrez,  Source
major histocompatibility complex, class II, DP alpha 111402-0.754-0.5042Yes
51H3F3BH3F3B
Entrez,  Source
H3 histone, family 3B (H3.3B)11464-0.772-0.4981Yes
52HIST2H2BEHIST2H2BE
Entrez,  Source
histone cluster 2, H2be11467-0.772-0.4877Yes
53HIST1H3GHIST1H3G
Entrez,  Source
histone cluster 1, H3g11620-0.813-0.4877Yes
54H2AFZH2AFZ
Entrez,  Source
H2A histone family, member Z11662-0.826-0.4794Yes
55HIST1H3CHIST1H3C
Entrez,  Source
histone cluster 1, H3c11700-0.836-0.4707Yes
56HIST2H2ACHIST2H2AC
Entrez,  Source
histone cluster 2, H2ac11752-0.851-0.4628Yes
57HIST1H2BKHIST1H2BK
Entrez,  Source
histone cluster 1, H2bk11753-0.852-0.4511Yes
58HLA-DMAHLA-DMA
Entrez,  Source
major histocompatibility complex, class II, DM alpha11761-0.855-0.4400Yes
59HIST1H4HHIST1H4H
Entrez,  Source
histone cluster 1, H4h11912-0.903-0.4386Yes
60HIST3H3HIST3H3
Entrez,  Source
histone cluster 3, H311980-0.927-0.4308Yes
61HIST1H2BMHIST1H2BM
Entrez,  Source
histone cluster 1, H2bm11993-0.930-0.4190Yes
62HIST1H3JHIST1H3J
Entrez,  Source
histone cluster 1, H3j12011-0.935-0.4075Yes
63HIST1H3DHIST1H3D
Entrez,  Source
histone cluster 1, H3d12051-0.951-0.3974Yes
64C5C5
Entrez,  Source
complement component 512166-0.993-0.3921Yes
65HIST1H4AHIST1H4A
Entrez,  Source
histone cluster 1, H4a12181-1.002-0.3795Yes
66HIST1H2AGHIST1H2AG
Entrez,  Source
histone cluster 1, H2ag12228-1.017-0.3689Yes
67HIST1H3FHIST1H3F
Entrez,  Source
histone cluster 1, H3f12289-1.045-0.3590Yes
68HIST1H2BDHIST1H2BD
Entrez,  Source
histone cluster 1, H2bd12383-1.082-0.3510Yes
69HIST1H2BEHIST1H2BE
Entrez,  Source
histone cluster 1, H2be12394-1.088-0.3369Yes
70HIST1H2BLHIST1H2BL
Entrez,  Source
histone cluster 1, H2bl12419-1.099-0.3237Yes
71HIST3H2BBHIST3H2BB
Entrez,  Source
histone cluster 3, H2bb12448-1.111-0.3106Yes
72H2AFY2H2AFY2
Entrez,  Source
H2A histone family, member Y212457-1.117-0.2959Yes
73HIST1H2ADHIST1H2AD
Entrez,  Source
histone cluster 1, H2ad12471-1.123-0.2816Yes
74H2AFVH2AFV
Entrez,  Source
H2A histone family, member V12475-1.124-0.2665Yes
75HIST1H2BHHIST1H2BH
Entrez,  Source
histone cluster 1, H2bh12692-1.226-0.2654Yes
76HIST1H2BOHIST1H2BO
Entrez,  Source
histone cluster 1, H2bo12705-1.235-0.2494Yes
77HIST3H2AHIST3H2A
Entrez,  Source
histone cluster 3, H2a12752-1.259-0.2356Yes
78HIST1H2AJHIST1H2AJ
Entrez,  Source
histone cluster 1, H2aj12817-1.290-0.2227Yes
79HIST1H3BHIST1H3B
Entrez,  Source
histone cluster 1, H3b12862-1.324-0.2078Yes
80HIST1H2AHHIST1H2AH
Entrez,  Source
histone cluster 1, H2ah13029-1.444-0.2002Yes
81HLA-DRB5HLA-DRB5
Entrez,  Source
major histocompatibility complex, class II, DR beta 513134-1.541-0.1867Yes
82HIST1H3EHIST1H3E
Entrez,  Source
histone cluster 1, H3e13190-1.598-0.1689Yes
83HLA-DPB1HLA-DPB1
Entrez,  Source
major histocompatibility complex, class II, DP beta 113246-1.659-0.1503Yes
84HIST1H3HHIST1H3H
Entrez,  Source
histone cluster 1, H3h13453-1.932-0.1389Yes
85HIST2H3CHIST2H3C
Entrez,  Source
histone cluster 2, H3c13476-1.964-0.1138Yes
86HIST1H2AKHIST1H2AK
Entrez,  Source
histone cluster 1, H2ak13482-1.976-0.0872Yes
87HIST1H2AMHIST1H2AM
Entrez,  Source
histone cluster 1, H2am13618-2.264-0.0661Yes
88HIST1H3AHIST1H3A
Entrez,  Source
histone cluster 1, H3a13658-2.369-0.0367Yes
89H3F3AH3F3A
Entrez,  Source
H3 histone, family 3A13867-3.8830.0012Yes
Table: GSEA details [plain text format]



Fig 2: KEGG_SYSTEMIC_LUPUS_ERYTHEMATOSUS   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: KEGG_SYSTEMIC_LUPUS_ERYTHEMATOSUS: Random ES distribution   
Gene set null distribution of ES for KEGG_SYSTEMIC_LUPUS_ERYTHEMATOSUS