Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | data_collapsed_to_symbols.class.cls #4hr_versus_0hr.class.cls #4hr_versus_0hr_repos |
| Phenotype | class.cls#4hr_versus_0hr_repos |
| Upregulated in class | 0hr |
| GeneSet | PID_SYNDECAN_1_PATHWAY |
| Enrichment Score (ES) | -0.5124375 |
| Normalized Enrichment Score (NES) | -1.5354037 |
| Nominal p-value | 0.0 |
| FDR q-value | 1.0 |
| FWER p-Value | 0.944 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | COL1A1 | COL1A1 Entrez, Source | collagen, type I, alpha 1 | 2350 | 1.050 | -0.1214 | No |
| 2 | COL9A1 | COL9A1 Entrez, Source | collagen, type IX, alpha 1 | 3638 | 0.657 | -0.1841 | No |
| 3 | COL14A1 | COL14A1 Entrez, Source | collagen, type XIV, alpha 1 (undulin) | 3962 | 0.577 | -0.1809 | No |
| 4 | COL6A2 | COL6A2 Entrez, Source | collagen, type VI, alpha 2 | 4886 | 0.386 | -0.2298 | No |
| 5 | COL4A1 | COL4A1 Entrez, Source | collagen, type IV, alpha 1 | 5540 | 0.268 | -0.2647 | No |
| 6 | COL10A1 | COL10A1 Entrez, Source | collagen, type X, alpha 1(Schmid metaphyseal chondrodysplasia) | 5736 | 0.236 | -0.2679 | No |
| 7 | COL16A1 | COL16A1 Entrez, Source | collagen, type XVI, alpha 1 | 6047 | 0.190 | -0.2815 | No |
| 8 | COL13A1 | COL13A1 Entrez, Source | collagen, type XIII, alpha 1 | 6100 | 0.180 | -0.2770 | No |
| 9 | COL11A2 | COL11A2 Entrez, Source | collagen, type XI, alpha 2 | 6131 | 0.176 | -0.2711 | No |
| 10 | SDCBP | SDCBP Entrez, Source | syndecan binding protein (syntenin) | 6192 | 0.166 | -0.2678 | No |
| 11 | MAPK1 | MAPK1 Entrez, Source | mitogen-activated protein kinase 1 | 7460 | -0.029 | -0.3579 | No |
| 12 | CASK | CASK Entrez, Source | calcium/calmodulin-dependent serine protein kinase (MAGUK family) | 7629 | -0.056 | -0.3675 | No |
| 13 | COL7A1 | COL7A1 Entrez, Source | collagen, type VII, alpha 1 (epidermolysis bullosa, dystrophic, dominant and recessive) | 7982 | -0.114 | -0.3877 | No |
| 14 | COL6A1 | COL6A1 Entrez, Source | collagen, type VI, alpha 1 | 8264 | -0.158 | -0.4007 | No |
| 15 | MET | MET Entrez, Source | met proto-oncogene (hepatocyte growth factor receptor) | 8497 | -0.197 | -0.4084 | No |
| 16 | HPSE | HPSE Entrez, Source | heparanase | 8548 | -0.206 | -0.4025 | No |
| 17 | COL6A3 | COL6A3 Entrez, Source | collagen, type VI, alpha 3 | 8839 | -0.254 | -0.4118 | No |
| 18 | COL9A3 | COL9A3 Entrez, Source | collagen, type IX, alpha 3 | 9388 | -0.342 | -0.4356 | No |
| 19 | COL5A1 | COL5A1 Entrez, Source | collagen, type V, alpha 1 | 9790 | -0.410 | -0.4457 | No |
| 20 | PRKACA | PRKACA Entrez, Source | protein kinase, cAMP-dependent, catalytic, alpha | 10715 | -0.578 | -0.4859 | Yes |
| 21 | COL5A2 | COL5A2 Entrez, Source | collagen, type V, alpha 2 | 10751 | -0.587 | -0.4614 | Yes |
| 22 | LAMA5 | LAMA5 Entrez, Source | laminin, alpha 5 | 10831 | -0.606 | -0.4393 | Yes |
| 23 | MMP9 | MMP9 Entrez, Source | matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase) | 10991 | -0.642 | -0.4213 | Yes |
| 24 | HGF | HGF Entrez, Source | hepatocyte growth factor (hepapoietin A; scatter factor) | 11125 | -0.678 | -0.3997 | Yes |
| 25 | PPIB | PPIB Entrez, Source | peptidylprolyl isomerase B (cyclophilin B) | 11247 | -0.710 | -0.3758 | Yes |
| 26 | BSG | BSG Entrez, Source | basigin (Ok blood group) | 11390 | -0.751 | -0.3516 | Yes |
| 27 | TGFB1 | TGFB1 Entrez, Source | transforming growth factor, beta 1 (Camurati-Engelmann disease) | 11808 | -0.868 | -0.3418 | Yes |
| 28 | COL4A6 | COL4A6 Entrez, Source | collagen, type IV, alpha 6 | 12013 | -0.937 | -0.3135 | Yes |
| 29 | COL4A5 | COL4A5 Entrez, Source | collagen, type IV, alpha 5 (Alport syndrome) | 12393 | -1.087 | -0.2909 | Yes |
| 30 | SDC1 | SDC1 Entrez, Source | syndecan 1 | 12823 | -1.293 | -0.2624 | Yes |
| 31 | MAPK3 | MAPK3 Entrez, Source | mitogen-activated protein kinase 3 | 12941 | -1.374 | -0.2077 | Yes |
| 32 | COL9A2 | COL9A2 Entrez, Source | collagen, type IX, alpha 2 | 13096 | -1.508 | -0.1495 | Yes |
| 33 | COL12A1 | COL12A1 Entrez, Source | collagen, type XII, alpha 1 | 13879 | -4.488 | 0.0003 | Yes |
