Details for gene set KEGG_PARKINSONS_DISEASE[GSEA]

Table: GSEA Results Summary

Dataset	normalized_counts_per_kilobase_for_GSEA_1.class_1.cls #AHRR-overexpressed_versus_Control
Phenotype	class_1.cls#AHRR-overexpressed_versus_Control
Upregulated in class	AHRR-overexpressed
GeneSet	KEGG_PARKINSONS_DISEASE
Enrichment Score (ES)	0.45049366
Normalized Enrichment Score (NES)	1.4902834
Nominal p-value	0.0
FDR q-value	0.63404566
FWER p-Value	1.0

Fig 1: Enrichment plot: KEGG_PARKINSONS_DISEASE   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

Table: GSEA details [plain text format]

	PROBE	DESCRIPTION (from dataset)	GENE SYMBOL	GENE_TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	COX8C	na			19	9223372036854775807.-1-1-1	-0.0007	Yes
2	LRRK2	na			1071	1.179	-0.0124	Yes
3	SLC25A4	na			1217	1.054	0.0220	Yes
4	COX6B2	na			2010	0.648	0.0034	Yes
5	NDUFS3	na			2132	0.605	0.0210	Yes
6	NDUFA1	na			2541	0.500	0.0182	Yes
7	SLC18A1	na			2708	0.461	0.0274	Yes
8	CASP9	na			2764	0.449	0.0424	Yes
9	NDUFA9	na			2783	0.444	0.0593	Yes
10	COX6B1	na			2818	0.438	0.0751	Yes
11	ATP5A1	na			2884	0.424	0.0885	Yes
12	UBE2L6	na			2900	0.421	0.1046	Yes
13	NDUFS7	na			2965	0.411	0.1176	Yes
14	NDUFB2	na			2973	0.409	0.1337	Yes
15	COX4I1	na			3028	0.398	0.1467	Yes
16	ATP5G3	na			3153	0.374	0.1548	Yes
17	UQCRFS1	na			3198	0.366	0.1671	Yes
18	ATP5B	na			3283	0.350	0.1765	Yes
19	SDHB	na			3375	0.338	0.1850	Yes
20	NDUFC1	na			3475	0.326	0.1925	Yes
21	SLC25A5	na			3501	0.323	0.2041	Yes
22	UQCRQ	na			3614	0.308	0.2102	Yes
23	NDUFA4	na			3691	0.299	0.2180	Yes
24	NDUFS6	na			3745	0.293	0.2269	Yes
25	NDUFA2	na			3809	0.287	0.2349	Yes
26	COX8A	na			3825	0.284	0.2455	Yes
27	UQCR10	na			3851	0.281	0.2554	Yes
28	UQCR11	na			3864	0.281	0.2661	Yes
29	COX7C	na			3907	0.277	0.2749	Yes
30	NDUFB8	na			3914	0.276	0.2856	Yes
31	NDUFA3	na			3945	0.273	0.2949	Yes
32	NDUFV1	na			3998	0.266	0.3027	Yes
33	PARK7	na			4053	0.261	0.3102	Yes
34	COX6A1	na			4124	0.253	0.3165	Yes
35	UBB	na			4300	0.237	0.3162	Yes
36	PARK2	na			4306	0.237	0.3254	Yes
37	ATP5F1	na			4320	0.234	0.3342	Yes
38	CYC1	na			4356	0.232	0.3415	Yes
39	COX7B	na			4366	0.231	0.3503	Yes
40	NDUFB7	na			4394	0.229	0.3580	Yes
41	UQCRC1	na			4453	0.225	0.3638	Yes
42	NDUFB1	na			4457	0.224	0.3727	Yes
43	UQCRC2	na			4492	0.222	0.3797	Yes
44	ATP5G2	na			4801	0.199	0.3704	Yes
45	NDUFB10	na			4910	0.191	0.3720	Yes
46	SDHD	na			4941	0.189	0.3779	Yes
47	COX7A2L	na			4952	0.188	0.3850	Yes
48	ATP5D	na			4959	0.188	0.3922	Yes
49	COX5A	na			4986	0.186	0.3982	Yes
50	NDUFS8	na			5004	0.185	0.4047	Yes
51	UQCRB	na			5038	0.183	0.4102	Yes
52	NDUFA10	na			5053	0.182	0.4168	Yes
53	NDUFS5	na			5108	0.178	0.4209	Yes
54	COX5B	na			5128	0.177	0.4270	Yes
55	ATP5E	na			5185	0.173	0.4308	Yes
56	SDHC	na			5276	0.168	0.4325	Yes
57	UBE2J2	na			5514	0.153	0.4253	Yes
58	CYCS	na			5589	0.149	0.4271	Yes
59	UBA1	na			5608	0.147	0.4321	Yes
60	ATP5G1	na			5624	0.146	0.4371	Yes
61	NDUFAB1	na			5711	0.141	0.4379	Yes
62	NDUFB5	na			5749	0.139	0.4414	Yes
63	NDUFA8	na			5829	0.133	0.4424	Yes
64	NDUFV3	na			5895	0.129	0.4439	Yes
65	UQCRH	na			6086	0.118	0.4380	Yes
66	UBE2L3	na			6182	0.113	0.4372	Yes
67	VDAC1	na			6207	0.112	0.4403	Yes
68	ATP5H	na			6219	0.111	0.4442	Yes
69	COX6C	na			6247	0.110	0.4471	Yes
70	NDUFA7	na			6265	0.109	0.4505	Yes
71	ATP5O	na			6464	0.097	0.4432	No
72	NDUFA6	na			6524	0.093	0.4437	No
73	SDHA	na			6673	0.086	0.4388	No
74	SLC18A2	na			6688	0.085	0.4414	No
75	ATP5C1	na			6908	0.075	0.4321	No
76	HTRA2	na			7220	0.060	0.4170	No
77	NDUFC2	na			7301	0.056	0.4147	No
78	NDUFS2	na			7320	0.055	0.4159	No
79	NDUFB3	na			7362	0.053	0.4157	No
80	VDAC2	na			7410	0.050	0.4151	No
81	NDUFS1	na			7440	0.049	0.4155	No
82	UBE2G1	na			7814	0.032	0.3957	No
83	NDUFB9	na			7842	0.031	0.3955	No
84	COX7A2	na			8032	0.023	0.3858	No
85	SEPT5	na			8258	0.013	0.3736	No
86	ATP5J	na			8570	-0.002	0.3561	No
87	PPID	na			8824	-0.013	0.3424	No
88	NDUFA4L2	na			8857	-0.015	0.3412	No
89	UBE2G2	na			8863	-0.015	0.3415	No
90	NDUFA5	na			8894	-0.016	0.3404	No
91	NDUFB4	na			9320	-0.034	0.3178	No
92	VDAC3	na			9660	-0.050	0.3008	No
93	NDUFV2	na			9908	-0.061	0.2893	No
94	NDUFB6	na			10031	-0.067	0.2851	No
95	APAF1	na			10357	-0.082	0.2701	No
96	CASP3	na			10710	-0.099	0.2543	No
97	NDUFS4	na			12094	-0.171	0.1832	No
98	PINK1	na			13071	-0.234	0.1376	No
99	UQCRHL	na			13185	-0.241	0.1410	No
100	SNCAIP	na			13379	-0.253	0.1403	No
101	UBA7	na			14879	-0.410	0.0723	No
102	UBE2J1	na			15629	-0.542	0.0520	No
103	COX7A1	na			16743	-0.891	0.0252	No
104	GPR37	na			16772	-0.910	0.0603	No

Fig 2: KEGG_PARKINSONS_DISEASE   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: KEGG_PARKINSONS_DISEASE: Random ES distribution   
Gene set null distribution of ES for KEGG_PARKINSONS_DISEASE