Information for motif2


Reverse Opposite:

p-value:1e-20
log p-value:-4.774e+01
Information Content per bp:1.851
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif0.14%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets98.2 +/- 49.4bp
Average Position of motif in Background70.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0039.1_Klf4/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TAGGGACAGGAC
TAAAGGAAGG--

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TAGGGACAGGAC
CCAGGAACAG---

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq/Homer

Match Rank:3
Score:0.58
Offset:4
Orientation:forward strand
Alignment:TAGGGACAGGAC--
----AACAGGAAGT

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq/Homer

Match Rank:4
Score:0.55
Offset:4
Orientation:forward strand
Alignment:TAGGGACAGGAC--
----NACAGGAAAT

ERG(ETS)/VCaP-ERG-ChIP-Seq/Homer

Match Rank:5
Score:0.55
Offset:5
Orientation:forward strand
Alignment:TAGGGACAGGAC---
-----ACAGGAAGTG

MA0057.1_MZF1_5-13/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TAGGGACAGGAC
GGAGGGGGAA---

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TAGGGACAGGAC
TGAGTGACAGSC-

PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TAGGGACAGGAC
GAAAGTGAAAGT--

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq/Homer

Match Rank:9
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TAGGGACAGGAC
NTGATTGACAGN--

PH0141.1_Pknox2/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TAGGGACAGGAC---
NNATTGACAGGTGCTT