Information for motif20


Reverse Opposite:

p-value:1e-11
log p-value:-2.612e+01
Information Content per bp:1.495
Number of Target Sequences with motif202.0
Percentage of Target Sequences with motif1.89%
Number of Background Sequences with motif443.5
Percentage of Background Sequences with motif1.12%
Average Position of motif in Targets101.0 +/- 54.1bp
Average Position of motif in Background98.6 +/- 54.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq/Homer/

Match Rank:1
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CWATWATAGD
CTATTTTTGG

MF0008.1_MADS_class/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CWATWATAGD
CCATATATGG-

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CWATWATAGD-
KCTATTTTTRGH

PB0172.1_Sox1_2/Jaspar

Match Rank:4
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------CWATWATAGD
NNNTAACAATTATAN-

PB0195.1_Zbtb3_2/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CWATWATAGD------
CAATCACTGGCAGAAT

MA0158.1_HOXA5/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CWATWATAGD
CACTAATT--

PB0184.1_Tbp_2/Jaspar

Match Rank:7
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----CWATWATAGD
GNNCGCTTAAATCGG

PB0078.1_Srf_1/Jaspar

Match Rank:8
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CWATWATAGD-
TNCCATATATGGNA

TATA-Box(TBP)/Promoter/Homer

Match Rank:9
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CWATWATAGD
GNCTATAAAAGG

MA0125.1_Nobox/Jaspar

Match Rank:10
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--CWATWATAGD
ACCAATTA----